Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00852 ATGAACATTCATGATGAAGAATTTAGAAGAATGGGTTATTTCCTCTTATTTCTACTGTGCCTAATAATTGTAACCCTTTTAATTACAACTGCCTCTTATATATGCTCTCTGCCAATTGCTTCAACTCAATCACCTTCTTCTCCTCAGCCTTCAGTTATTGGGCGTGACACACACTCTAACCACACAACAATCACTGTTTTGGCTGTGGAACCAGGTGAAGTTCTACACTTGGACCATACTACTACTCTATGTAGAAGCTATGACCAAATTAATACTCTTCCATTAGAAGGCAAAATGTGTGATAAAAGTATTAATAATTCAAGTAGTTGTTGTTGCTCTATATGTTTGATGGATTACAAAGAATCAGATTTGTTGAGAATGCTTCCTGGCTGTGGTCATTTCTTTCATGTTACTTGTGTTGATCCTTGGTTGAGAATGAATTTGACATGCCCTGTTTGTAGGAAGACATATCAATCGGTATAA 483 0.3644 MNIHDEEFRRMGYFLLFLLCLIIVTLLITTASYICSLPIASTQSPSSPQPSVIGRDTHSNHTTITVLAVEPGEVLHLDHTTTLCRSYDQINTLPLEGKMCDKSINNSSSCCCSICLMDYKESDLLRMLPGCGHFFHVTCVDPWLRMNLTCPVCRKTYQSV 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00852 160 ProSiteProfiles Zinc finger RING-type profile. 112 154 IPR001841 -
Car04g00852 160 Pfam Ring finger domain 112 154 IPR001841 -
Car04g00852 160 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 4 158 - -
Car04g00852 160 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 159 IPR013083 -
Car04g00852 160 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 4 158 IPR045899 -
Car04g00852 160 SMART ring_2 112 153 IPR001841 -
Car04g00852 160 SUPERFAMILY RING/U-box 111 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00852 Car-Chr4 8382506 8383375 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00852 93 156 C3H Transcription Factor Family AT5G06490 54.545 1.74e-19 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00852 - - mtr:MTR_1g090440 180.259