Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00843 ATGCACACATTTGAATTGATGTTAAGAGAAGCTAAGATGGCTGGAAACTTCAGATTCATGATGGATCAGAAGGATATTGTTAGATTCTTGACAACAACTATTGATAGTTTCATTCAAGATAGGTTAATCAACAAAGAACAAAGAACACAACATAAAGATCAGTGTGCTGAGAGGTTAGCAGCTGAAGATGGAAATGGCGACAAAGAAACCGAGGTAGAATATTCTGATCAAGCAGTTTTAGCAAACCTAGATTGGGGTATTGAAGCACTTGAAGAAGCTATAAATACTTATAACATGGAAACTAAGCTTGCAAGATTAGATTATGCAGAGAAGATGTTGCAAGTGTGTGCAATGTTGAATCCTAAGCAAAAAACTGCTGGAGTTCCAAACTCATATCTATCAGCTTGGGCACATTTAAATTTATCATACTTATGGAAGTTGAGGAATAACATTCAGAGTTGTGTTTTTCATGCTATTGAGATGTTCATTGTTGATCCTTTTTTCTCTAGGATTGATTTTGCACCTGAGTTATGGAAAAACTTGTTTCTTCCACATATGAGTTCAATTGTAGGGTGGTATTCAGAAGAGAGACATAGGCTTATGATGGAAGTTATACCCGATTCTTCTGATTTGTCTTATACAGCTGATTTTGAACAATTTTTCAATGAGTCTTTGGTTTTTTCTATGAGGCCACATCAACTTGATAAATTGCAAAAATTGGAGCAGCTTTATGGAGAGTCTTTAGACGAAAACACAAGGCTATATGCAAAATATTATAATGATTGTATGAACCCTGATTCAACCTCAAGTAAAAGGGTGGTTCCTATGTTGCCAATTGCTGAGCCTCCAATGACTCCTTTGCATGAGTTGAGCCGGTCTGTTCCAGATTTTGTAAAATTTGGTCCTATTTTGCCTAAGAGTTCTGGATTTTCTATGACAAGAAGATGTAAAGATGTTTTAATTGAAAAAACCAGACAGAATTTAACTTCCAATTCCAACCATTCTAAGGGGGAAAAATCATCCACATGGGGAGCTAAGGAGAGCATAATTGAAGATAATGAACATGATTCAGACTCTGAGGCTTATGATGCATCTTTGGATTCAGATAAAAACAATATTTTCTCACCTGAACCTTCAAATGTCAAGGATGAGGATGTTGAACCAAAAGTATATCAATCAAACCAGAAGAATCAAATACAATCACCTAGTATCTCTCCTATGGGATCCCCAAGAACTGCTCCAAAATACTCACCTACAAATCCTAATATCCATCATAAAAAAGAATCGAAGTTTTTGCGTTTACTGTCAAGTCGTTTCAGGAACTCGACTGTTTGTGACTCTCAGTCATCATCTCCAGACATAAGCTCTGATCATATTTTAAATGGTGATGAAGAAGTGATGGTCTTGGAAAATATTAAGGGGAAGAATGATAGTCAAACACCAAGTATGAATCAAGACAATGAGAGTAGTCTGGTGTTGAATGACAGTTCCCATTGTGAAAGTGATGATGGATATCAAAGTTCAACTTCATTTCCAAAATTAGAGAAATTGACAATTGGATCAAAACCACCCAAAGATTTTGTTTGTCCAATCACAGGTCAGATATTTTGTGATCCTGTCACACTTGAAACAGGTCAGACCTATGAAAGAAAAGCAATTCAAGAGTGGCTCGGAACAGGAAACACAACATGCCCGATCACGCGACAACCTTTATCTGCAAACATCTTACCGAAAACAAATTATGTTTTGAAGAGATTGATAACATCATGGAAAGAACAGAATCCTAAACTAGCTCAAGAATTCTCAAATTCTAACACACCAAGGGGTTCTTCATGTTCTCCATCTGCAAAAGACATCGCAATTCTCTCAACTGTACAGAAAACAACTGATTCACCAAACGAAAGAGTTGGAGAAACACTTAATAATGTAGATTCTGATTTTGATTGCTTAGCTACTCTACTTAAGAATGGTTTGTCTGAGGCTGCACTTCTTATTTACCAAATAAGGCCAGTTTTTGCTCAGCTTTCAGAACATGAACTTATACCCTCTCTTATCCAAGTGATCCAGAACAAAAATGAGGATATAGATGATTTTCAGTTAGCTATAGACCCTAGAGCTGCCTCCATAGCAGTTCTTGAGCAAATTTTAATGGGAGGGGATGAATATAACAGGTCTGTCAATGCTTCAAGTGTTATCTCAGCAAATGGAATTCCGGCCATAGTAAAGTATTTGGACAGAACAGAAGGAAGGAGGTCTGTCGTTTCCATACTGTTGTGTTGTATGCAAGCTGAAAAAAGCTGCAAGAGCTCAATTGCAAATAGGATTGAATTGTCACCTGTTCTCGAATTATTTCACGGTGGAAATGATAGCGTGAGAGGAACCTGTGTGGAGTTTCTCTCAGAACTGGTTCGATTGAATAGGAGGACGTTCAGCAACCAGATATTACAGATAATCAAGGATGAAGGAGCATTCAGTACAATGCATACATTTCTTGTATATCTTCAGATGGCTCCAATGGAACATCAAATTGCTGTTGCCAGTCTTCTTCTTCAGCTTGATCTTCTGGTTGTGCCACGAAAGATGAGCATTTACAGGGAAGAAGCAGTAGAGACACTGATAGAAGCACTTTGGCAAAAGGACTTCTCAAATACTCAAATGAAGGCTCTAGATGCTTTACTATTTCTTATTGGACATGTCACTTCTTCAGGAAAGTCATATACCGAAGCTTGGTTGCTGAAGATTGCAGGATTCGTTCAACCTTACAATGCTTTAATGAAGGCTGAGCAATTGGGACACTATGAAAATGATGTGATGGAAACAATGGAGGATGAAGAAAATGCCATGAACTCTTGGCAGAAAAGGGTAGCTTTTGTACTTTGCAATCATGAAAACGGTTCAATATTTCAAGCTTTGGAAGAATGTCTAAAGAGCAACTCATTAAAGATGGCAAAATCTTGCCTTGTTCTTGCCACATGGCTCACCCACATGCTCTCTACTCTACCTGATACTGGTCTTAGGGACGCTGCTCGGAAATCCCTTTTTGAGGAATTTATAAATGTCCTTCAGTCATCCAAGAACCTAGAAGAAAAGATCCTGGCTGCCCTAGCTTTGAAGTCTTTCATTAGTGATCCAACCGCTCACGAAGCACTTAGAGTTTATGCTAAAAGTATCTATAGAATCTTGAGGAAGCTGAAGAAATATTCAACAGTGGCAGTTGAAATCTTGAAAGCCTTACTAAACTTAAATTCTGTTGATGTGACAGAGTTGTGGAGTTGTAAAGAAGTAGTTGAGTTGGATTTGAGCTCAAATGGAGAGGTCCTTTCTTTGCATTACCTGAATGGTCAGGTCTTCAGTGGACATTCTGATGGAACTATCAAGGTATGGGACGCAAGGAAGAGAATACCACGAGTAATTCAAGAAACTCGTGAGCACAAAAAAGCTATTACGTCTCTTTGTTCTTCGGTTGATAGACTATACAGTTCTTCCATGGACAAAACAATCCGGGTTTGGTCAATTAAACCTGATGGGATTAAATGTACAGACGTCTATGATGTTAAGGAGGTAGTGTTTGAGCTAGTAGCCAATGCTGAATTAGCTTGCTATGTAACTCAAGGAACAGGAGTTTTTAATTGGTCAGGGGCTCCAAAGCACATCAATTTCAGTAAATATGTGAAATGCCTTGCTGTTGCTGGGGACAGACTGTATTGTGGTTGCTCTGGTTACAGCATACAGGAGGTTGACTTGTCCAAACACACATCAAATTCATTCTTCACTGGTACAAAAAAATTGTTGGGAAAACAAAGCATACACTCCCTTCAAATTCATGATGATTTCCTCTTTGCCTGTGGTACCTCTGTTGATTCAACAGCAGGAAAGATATTTTCACTTTCCTCCAAAATGGTGGTGGGGTCACTCTCAACTGGACTTGACGTCCATCGTGTAGCCGTCAACAGCGACTTCATATTTGCTGGTACAAAATTTGGCACCATTGAAGTATGGCTAAAAGATAAGTTCACCCGGGTTGCTTCCATCAAAATGGCTGGTGGTCATACAAAAATTACATCATTAGTGTCAGATGTTGATGGCATGATGCTTTTTGTTGGTTCCTCTGATGGAAAGATCCAGGTTTGGGCTTTGGATTAA 4143 0.3852 MHTFELMLREAKMAGNFRFMMDQKDIVRFLTTTIDSFIQDRLINKEQRTQHKDQCAERLAAEDGNGDKETEVEYSDQAVLANLDWGIEALEEAINTYNMETKLARLDYAEKMLQVCAMLNPKQKTAGVPNSYLSAWAHLNLSYLWKLRNNIQSCVFHAIEMFIVDPFFSRIDFAPELWKNLFLPHMSSIVGWYSEERHRLMMEVIPDSSDLSYTADFEQFFNESLVFSMRPHQLDKLQKLEQLYGESLDENTRLYAKYYNDCMNPDSTSSKRVVPMLPIAEPPMTPLHELSRSVPDFVKFGPILPKSSGFSMTRRCKDVLIEKTRQNLTSNSNHSKGEKSSTWGAKESIIEDNEHDSDSEAYDASLDSDKNNIFSPEPSNVKDEDVEPKVYQSNQKNQIQSPSISPMGSPRTAPKYSPTNPNIHHKKESKFLRLLSSRFRNSTVCDSQSSSPDISSDHILNGDEEVMVLENIKGKNDSQTPSMNQDNESSLVLNDSSHCESDDGYQSSTSFPKLEKLTIGSKPPKDFVCPITGQIFCDPVTLETGQTYERKAIQEWLGTGNTTCPITRQPLSANILPKTNYVLKRLITSWKEQNPKLAQEFSNSNTPRGSSCSPSAKDIAILSTVQKTTDSPNERVGETLNNVDSDFDCLATLLKNGLSEAALLIYQIRPVFAQLSEHELIPSLIQVIQNKNEDIDDFQLAIDPRAASIAVLEQILMGGDEYNRSVNASSVISANGIPAIVKYLDRTEGRRSVVSILLCCMQAEKSCKSSIANRIELSPVLELFHGGNDSVRGTCVEFLSELVRLNRRTFSNQILQIIKDEGAFSTMHTFLVYLQMAPMEHQIAVASLLLQLDLLVVPRKMSIYREEAVETLIEALWQKDFSNTQMKALDALLFLIGHVTSSGKSYTEAWLLKIAGFVQPYNALMKAEQLGHYENDVMETMEDEENAMNSWQKRVAFVLCNHENGSIFQALEECLKSNSLKMAKSCLVLATWLTHMLSTLPDTGLRDAARKSLFEEFINVLQSSKNLEEKILAALALKSFISDPTAHEALRVYAKSIYRILRKLKKYSTVAVEILKALLNLNSVDVTELWSCKEVVELDLSSNGEVLSLHYLNGQVFSGHSDGTIKVWDARKRIPRVIQETREHKKAITSLCSSVDRLYSSSMDKTIRVWSIKPDGIKCTDVYDVKEVVFELVANAELACYVTQGTGVFNWSGAPKHINFSKYVKCLAVAGDRLYCGCSGYSIQEVDLSKHTSNSFFTGTKKLLGKQSIHSLQIHDDFLFACGTSVDSTAGKIFSLSSKMVVGSLSTGLDVHRVAVNSDFIFAGTKFGTIEVWLKDKFTRVASIKMAGGHTKITSLVSDVDGMMLFVGSSDGKIQVWALD 1380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00843 1380 Gene3D - 655 940 IPR011989 -
Car04g00843 1380 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 13 634 - -
Car04g00843 1380 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1346 1380 - -
Car04g00843 1380 SUPERFAMILY WD40 repeat-like 1088 1379 IPR036322 GO:0005515
Car04g00843 1380 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 633 1380 - -
Car04g00843 1380 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 13 634 - -
Car04g00843 1380 SUPERFAMILY ARM repeat 643 1080 IPR016024 -
Car04g00843 1380 SMART Ubox_2 526 590 IPR003613 GO:0004842|GO:0016567
Car04g00843 1380 MobiDBLite consensus disorder prediction 352 426 - -
Car04g00843 1380 ProSiteProfiles Trp-Asp (WD) repeats profile. 1346 1380 IPR001680 GO:0005515
Car04g00843 1380 ProSiteProfiles U-box domain profile. 522 597 IPR003613 GO:0004842|GO:0016567
Car04g00843 1380 SUPERFAMILY RING/U-box 522 595 - -
Car04g00843 1380 Pfam U-box domain 524 594 IPR003613 GO:0004842|GO:0016567
Car04g00843 1380 Gene3D - 1083 1197 IPR015943 GO:0005515
Car04g00843 1380 Gene3D - 1202 1380 IPR015943 GO:0005515
Car04g00843 1380 ProSiteProfiles Trp-Asp (WD) repeats profile. 1141 1173 IPR001680 GO:0005515
Car04g00843 1380 CDD RING-Ubox_PUB 527 569 IPR045210 -
Car04g00843 1380 SMART WD40_4 1337 1378 IPR001680 GO:0005515
Car04g00843 1380 SMART WD40_4 1134 1171 IPR001680 GO:0005515
Car04g00843 1380 SMART WD40_4 1091 1129 IPR001680 GO:0005515
Car04g00843 1380 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 633 1380 - -
Car04g00843 1380 MobiDBLite consensus disorder prediction 391 419 - -
Car04g00843 1380 Pfam WD domain, G-beta repeat 1140 1171 IPR001680 GO:0005515
Car04g00843 1380 Pfam WD domain, G-beta repeat 1348 1377 IPR001680 GO:0005515
Car04g00843 1380 Pfam WD domain, G-beta repeat 1113 1129 IPR001680 GO:0005515
Car04g00843 1380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 513 605 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00843 Car-Chr4 8329558 8339594 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00843 514 594 U-box Gene Family AT1G49780 47.561 8.57e-17 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00843 - - han:110894713 1293.87