Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00840 ATGACAACATCAAAAGAAACTTCAAGTTTGAAACTATTGAGCCAACACCTGTTAGAGGATAATATATCAGAGTCATTTTTCACCAATCTCAATTCTGTCAAACTTGAATACCCCTCATCAGAAATTGATTTGGATCCATATTTTTCAGAACAAAACAGCTTCTATAGTTTTCTTGAAAGCTTTGGTTTTGAAGCTGATACACAAGTTGTTGTTGACTTCAATTCTGAGGTACAAAACTCTAATGCAGAGAGTTCCTTAGAAGAAACAAAGAACATATCAAATTCAGCTGAACCAATGGTGTTGGAGAAGAAGGAGTTACAAACATGTTATGGAGAGAGGCATTACAGGGGAGTGAGGAGAAGACCATGGGGTAAATTTGCTGCCGAGATTCGCGATTCAACAAGGAAAGGAAGCAGAGTTTGGTTAGGAACATTTAACAGTGAGATTGATGCTGCTAAGGCTTATGATTGTGCAGCTTTCAGGATGAGAGGTCAGAAAGCTATATTGAATTTTCCTTTGGAAGCTGGAGAAGCTAATCCGAAGCCTAATAACAGTGTTTGTGGCAGGAAAAGGAGAATACATCATAGAAATGTTGCCACAAGTTCAAGTTAA 612 0.3791 MTTSKETSSLKLLSQHLLEDNISESFFTNLNSVKLEYPSSEIDLDPYFSEQNSFYSFLESFGFEADTQVVVDFNSEVQNSNAESSLEETKNISNSAEPMVLEKKELQTCYGERHYRGVRRRPWGKFAAEIRDSTRKGSRVWLGTFNSEIDAAKAYDCAAFRMRGQKAILNFPLEAGEANPKPNNSVCGRKRRIHHRNVATSSS 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00840 203 CDD AP2 114 172 IPR001471 GO:0003700|GO:0006355
Car04g00840 203 SMART rav1_2 114 178 IPR001471 GO:0003700|GO:0006355
Car04g00840 203 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 5 194 - -
Car04g00840 203 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF105 5 194 - -
Car04g00840 203 Pfam AP2 domain 114 164 IPR001471 GO:0003700|GO:0006355
Car04g00840 203 SUPERFAMILY DNA-binding domain 114 174 IPR016177 GO:0003677
Car04g00840 203 PRINTS Ethylene responsive element binding protein signature 115 126 IPR001471 GO:0003700|GO:0006355
Car04g00840 203 PRINTS Ethylene responsive element binding protein signature 154 174 IPR001471 GO:0003700|GO:0006355
Car04g00840 203 ProSiteProfiles AP2/ERF domain profile. 114 172 IPR001471 GO:0003700|GO:0006355
Car04g00840 203 Gene3D AP2/ERF domain 113 174 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00840 Car-Chr4 8309635 8310473 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00840 1 192 AP2-EREBP Transcription Factor Family AT5G07580 40.291 2.09e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car04g00840 AP2 8.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00840 - - pvu:PHAVU_007G135900g 231.876