Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00835 ATGGAAACAACAACAGGATCCAAGTATTTGGAAGATACAATTATAAGAAGAGCCTCTTACTCTCTCACTTCTTCTCAGCATCATGTTCATGTTTTCAAAACTGAACTAAACTCATCAACACAAAAACCTTTTTTGTTTACTTCAAATTCCACTTCAATGAAAGAAGAAGTACCTTTATACACTTTGGTTAATCAAATTCCTCCAAAGTTCAATGGTCATCATCATGAAGACATTTATAGATTCAATTCTATCTCCAATTCAAATTTCTTAGCCTCAAATATAAAACACACCTTTGTTCCTCTAAATCTTTTGGAAACTCTTCCAACATCAACCATAACACAAAATTCTAATCAACCAACAACTCctttaccttcttcttcttcatcttcatcatcatcatcttcatctgctACACCGAAATATCCAAACTTAACTTTGTTTTTGAACCAACCATCCATGCTATACTCATCAAATTCAACCTCACATATCAAAAGCAATGAATTCACATCAACAAATTCACACCAAACATACCCTATTTCCCAATTAGGCCTAACACAACAACATCAAACTTATGATGATTCACACAAAATGAACAAGTCTTTCAATGAAAACTGGTTGAGTGTCACAAAGACTCAACCTATGAAGTATAGTGGAAGAGGAAAGTTGTTCAAAGGTGTGAGGCAGAGACATTGGGGCAAATGGGTTGCTGAAATTAGGTTACCAAGAAACAGAACTAGGGTTTGGTTAGGGACATTTGACACAGCTGAAGATGCTGCAATTGCATATGATACAGCAGCATATATACTAAGAGGTGAATGTGCTCAGTTAAATTTTCCAAATCTGAAACATGTGATTCATGCAAATTCATTGAATGGTACAACTGCTTCACTTGTTGAGGCAAAATTGCAAGCTATATCACAAGGTGTTAGTTCTAATAGAAAGTCAACTGTTTCAACAGAAAAGTCAAACAATGTTCATAGTGTTGAAAATGATAAGGATTCAACCATGATGAAGGAGTTGAAGTTTGGTACACAGGGGAATAAGGTTGGAGATGAAACAAATCAGAGAAACAAAAGTATACAGAATGAAATGTCTGATATGGAAGCTGTTCAGTTAAGTAGAATGTCATCTTTAGATATGGATATTATTTGGAATGAACTTCTTGTTTCTGATTCATAA 1179 0.3299 METTTGSKYLEDTIIRRASYSLTSSQHHVHVFKTELNSSTQKPFLFTSNSTSMKEEVPLYTLVNQIPPKFNGHHHEDIYRFNSISNSNFLASNIKHTFVPLNLLETLPTSTITQNSNQPTTPLPSSSSSSSSSSSSATPKYPNLTLFLNQPSMLYSSNSTSHIKSNEFTSTNSHQTYPISQLGLTQQHQTYDDSHKMNKSFNENWLSVTKTQPMKYSGRGKLFKGVRQRHWGKWVAEIRLPRNRTRVWLGTFDTAEDAAIAYDTAAYILRGECAQLNFPNLKHVIHANSLNGTTASLVEAKLQAISQGVSSNRKSTVSTEKSNNVHSVENDKDSTMMKELKFGTQGNKVGDETNQRNKSIQNEMSDMEAVQLSRMSSLDMDIIWNELLVSDS 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00835 392 SUPERFAMILY DNA-binding domain 222 279 IPR016177 GO:0003677
Car04g00835 392 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF062 4 391 - -
Car04g00835 392 MobiDBLite consensus disorder prediction 311 332 - -
Car04g00835 392 Gene3D AP2/ERF domain 222 280 IPR036955 GO:0003700|GO:0006355
Car04g00835 392 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 4 391 - -
Car04g00835 392 ProSiteProfiles AP2/ERF domain profile. 222 279 IPR001471 GO:0003700|GO:0006355
Car04g00835 392 SMART rav1_2 222 285 IPR001471 GO:0003700|GO:0006355
Car04g00835 392 CDD AP2 221 281 IPR001471 GO:0003700|GO:0006355
Car04g00835 392 MobiDBLite consensus disorder prediction 111 137 - -
Car04g00835 392 PRINTS Ethylene responsive element binding protein signature 223 234 IPR001471 GO:0003700|GO:0006355
Car04g00835 392 PRINTS Ethylene responsive element binding protein signature 245 261 IPR001471 GO:0003700|GO:0006355
Car04g00835 392 Pfam AP2 domain 223 271 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00835 Car-Chr4 8255201 8256379 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00835 99 387 AP2-EREBP Transcription Factor Family AT4G13620 42.484 1.25e-60 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car04g00835 AP2 1.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00835 - - cam:101510582 759.985