Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00824 ATGGCCCATACTAATGATAAACTGAATAAGCGTGATTTTTACTCTGAGAGAAGGCATCATGTAAACACTAGGAGGGATGCGGAAATTCTTAAATCCATTCCCCGGGTCAAAATCTTGAAGGACCTAGCACAACTGATAGATGCAGCAACATTACCCTTGGCTGTTACAATTTCTGGAAAAGTTGTTTCTGAAACCCCAATTAAGTGCGAGTTGACGGGTTTAAGAGGTATAATAGTTGAAGAAAGAGTTCCTTGGTATCTGGATGATGGGACTGGTCGTGTGCTTGTGGTTGAAGCTCGGGATGCCACTGATTTTAAATTACCTGCTGGAAGCTGGACATTTGAAAAGTCAGGTCGGACTCTAATGCTTGGAGTTAAGAGAATTGAATGGTTACTTCCGGTTGGAACTTCCTTGACTGTTGCTGGTGAGGCCACTAAAGATGATATCGGGATTATTCGAATTCAGCAACTTCCTGAAGGGCCATTTTATGTCGCTCGCAAAACCATCAATGAACACATTTCAAAATCCACGAATTGTGCAAGGTGGTGTAAGTATGCTTCTGTGGGCCTGACAGTGTTTGAAATAAAGAAAAACATATTTAAAAAGTTGAAGGATAGAGAGGACCCACAAAGACGGAGACAAGTAGAGGTAGAGTGTTTGAAGATGGCGATGGTTCCTTGGCGTGGCATCAGTTGCTGTTTGAGTGCTGCTGCTCTTTACCTTCTCGGTAGAGCCAGCGGAAGGGATGTTGAAATTCTTAAATCCGCTAACCGGGTCAATCAGCTGAGGGAGCTTGCACAACTGTTGGATGAGGAAATATTACCCATGGTTGTTGCAATTTCCGGAAGAGTTGGTTGTGAAACCCCAATTAACTGCGAGTTCAGTGGTTTAAGAGGTGTAATAGTTGAAGAAACAGCAGAGCAACATTTTCTCAAACACAATGATGCTGGTTCCTGGATACAAGATTCTGCATTAATGTTATCCATGAGTAAAGAGGTTCCTTGGTACCTGGATGATGGGACTGATCGTGTCCGTGTAGTTGGAGCTCGGGGTGCCACTGGTTTTGTATTACCTGTTGGGAGTGAGGCATTTGAAGAGTCGGGTCGATCACTTGTACGTGGAACATTGGATTATCTTCAAGGTCTAAAGATGCTTGGAGTTAAGAGAATAGAAAGGGTACTTCCAGTTGGAACTTCCTTGACTGTTGTTGGTGAGGCTGCTAGAGATGATGTTGGAACTGTTCGAGTTCAGCGACCCTCGAAAGGGCCATTTTATGTCTCTCCCAAAACCATTGATGAACTCATTGCAAATCTTGGGAAATGGGCGAGGTGGTATAAGTGTGCTTCTCTGGGCTTGACAGTGTTAGGTGCTTATCTGATAGCTAATCATGCTATTCGGTACATCTTGGAAAAACGGCGTCGCAGTGAATTGCAAAAAAGGGTTCTCGCTGCAGCTGCTAAGAGATCGGGACAAGATAATGGAGGTGAAAAGGCTGACAGTTTATCAGATGGTGCTAAAAGGGAACGTGCGATGCCAGATTTGTGTGTAATTTGCCTTGAGCAGGAATACAATTCCGTTTTTGTTCCGTGTGGGCATATGTGTTGCTGTACAGCTTGCTCTTCGCACTTAACCAGTTGTCCTCTTTGCCGGAGACAGATAGAGAAGGCTGTAAAGACTTTCCGTCATTGA 1689 0.4411 MAHTNDKLNKRDFYSERRHHVNTRRDAEILKSIPRVKILKDLAQLIDAATLPLAVTISGKVVSETPIKCELTGLRGIIVEERVPWYLDDGTGRVLVVEARDATDFKLPAGSWTFEKSGRTLMLGVKRIEWLLPVGTSLTVAGEATKDDIGIIRIQQLPEGPFYVARKTINEHISKSTNCARWCKYASVGLTVFEIKKNIFKKLKDREDPQRRRQVEVECLKMAMVPWRGISCCLSAAALYLLGRASGRDVEILKSANRVNQLRELAQLLDEEILPMVVAISGRVGCETPINCEFSGLRGVIVEETAEQHFLKHNDAGSWIQDSALMLSMSKEVPWYLDDGTDRVRVVGARGATGFVLPVGSEAFEESGRSLVRGTLDYLQGLKMLGVKRIERVLPVGTSLTVVGEAARDDVGTVRVQRPSKGPFYVSPKTIDELIANLGKWARWYKCASLGLTVLGAYLIANHAIRYILEKRRRSELQKRVLAAAAKRSGQDNGGEKADSLSDGAKRERAMPDLCVICLEQEYNSVFVPCGHMCCCTACSSHLTSCPLCRRQIEKAVKTFRH 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00824 562 Pfam Zinc finger, C3HC4 type (RING finger) 513 555 - -
Car04g00824 562 ProSiteProfiles Zinc finger RING-type profile. 515 550 IPR001841 -
Car04g00824 562 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SP1-RELATED 81 204 - -
Car04g00824 562 SUPERFAMILY RING/U-box 509 556 - -
Car04g00824 562 Pfam E3 Ubiquitin ligase 80 191 IPR022170 GO:0004842|GO:0006996|GO:0016567
Car04g00824 562 Pfam E3 Ubiquitin ligase 308 457 IPR022170 GO:0004842|GO:0006996|GO:0016567
Car04g00824 562 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 491 561 IPR013083 -
Car04g00824 562 CDD RING-HC_LRSAM1 514 553 - -
Car04g00824 562 PANTHER - 23 82 IPR044231 GO:0004842|GO:0016567
Car04g00824 562 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SP1-RELATED 23 82 - -
Car04g00824 562 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SP1-RELATED 224 529 - -
Car04g00824 562 PANTHER - 81 204 IPR044231 GO:0004842|GO:0016567
Car04g00824 562 PANTHER - 224 529 IPR044231 GO:0004842|GO:0016567
Car04g00824 562 Coils Coil 550 562 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00824 224 495 C3H Transcription Factor Family AT1G63900 72.993 6.53e-145 417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g00824 04 8174594 8184966 Car04g00824 04 8174594 8184966 ECH