Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00816 ATGGCTGAAGAAATGGATAAAACTGTTGATGATTATGAACAAGTAGTACAGGAGGAGGAAAAAGATTGTCATTACAAGAGAAAATCAGATGAGCCTTCTATGGATCCAGATAGTCCCATTTCATATGTCGATGATGACTTCCCTCCCTATGAATTTTCAATTCCGCCAAGCTTTAATGATATTGATTCATTCGAATTAGGGTTCGATTATGAAACACAGGAGGACGATTTGAACGAGGTTGAGGATTGGAGTGATCCTATGGCAACTCAGCTTGAGGAGTTACTCATGGCTAATTTGGATGCCATTTTCAGTAATGCAATAAAAAAGGTTGTTGAATCCGGCTACACTCAAGAAAGAGCTGAAACTGCCATTTCGAGGAAGGCTATATACTCTGAAGGAGACCCTCTTACAAATATTGTATACCACACAATCAATGTTTTGAAGGGAAAAGGAAATGATTCTACCTTCGATGTTGCATTTCAAAATGTTAAGCAGTTGCTGCATTATACCATGGTAGAGATGATTGGTATACTTTGTGAACTAAGACCCTCACTAACAGTAACTGAAGCAATGTGGGAGTTGCTGATACATGACTTGAGTATTCCGCGGGCCATTGCAGCGCATGATAAACTCAGTGATGATGTTTCTAAGGGGGAAACATCTGCCAATTCTGCGGTTCCGCTATCAAAGTCAGAGGTTAAAAGCTGTGATAAAACTCCAGATTGCAGCTCATCAACTGGCCAAAAGGGCTCCCAGGAATGTAAATCAGGACCTAATTCTAAGGTGAATAGTAGAAAAGAACTCGCATTAGCACTTAGGCAGAAGTTCCTTCATATGGAGAAAACTAAAGCTTGTGGAAAAGGGGGTGTTAAATTAGGGAAGCTTACAGCCGTAGGTGGTTTGATTGTTGAAAAAAGACTCAAGCCGCCATCTGAAACTCCAAATCAGAAAATGAAACGTGGTTCCTCAAATGCAAAGGGAGTTAAGATAGCAGAAGGAGTGTGCCATGTTTTAACCAATGATGCTTCAGTTTTAACTAAAGGAGGTAGCGCCACAAAATTGCCCAGAAAGGATGCAATGTCCACTTCTTCTACAGGGAAAACAACCAAAGCAAAAAATAAGCTATGCTCCCCTGACATTCAAAAGATTCATGATTACCGTGCTGGTATTCCTTTTGATGAGGTTTCGGGCACATATGTCCCACGGGATGAGAAGGAAGAACAAATTTTGAAATTAGTATCTCGAGTGCAAGAATTGCAAGATGAGCTACAAAGCTGGAGCGACTGGACGAATAAGAAGGTTATGCAGGTAGCTGACAAACTTCGCAAGCTGCAGGCTGAATCTAAATCGCTGAAGAAAGAAACTGAAGCGTATAGAAAAGATAGGAAAACTTTGGAGGAGAATACTGAGAAGAGGATCTCTGAAATGGAGAATGCCATCGATACTACTAAAAAGCAACTTGAGAGTGCTGCTGCTGCCACTCTCGTGCTACAGGAAAAAAAGTCCTTGCTAAAGAAGGAGTTGGATGCTGCTAAGTCGTGGGCTGTAAAGTCAATGGCAAGCCATCAAGAAGCACTGGAGAGAGAACAGGTAGCTGTTAAACAGGCCCAGTCATGGGAAACAGAGAAGGCCTTGCTTCGAGATGAGCTTGAGAATGAGAAGCAGAAATTGTGTAACCTGCAAGAGGAGATTGACAAGGGGAAAGATCATCTAGCCTATGCTGAGGGTAGACTAAAAAAGGAGAGAGCTACAACAGAAAGTATCCTTGCACAGGCTGCATCCATTAGAAAAGAAAGAGAACAATATGAAACACTCGTGAAATCTGAAGAGGATGCCCTTAGAAAGAAGGCAGCTAGTGATCTGCAGGAATATGTACAAAGCATGGTTAAGATAGAGAAGGAGATGGCTATGCTAAGACTAAAATCTGATTCCAAAAAAGCTACCCCATCTGTGAAAGACGACAAGGAATCTGAGACGTTGGCGATGGGGAGCCTGCAAGTCGTGGGGAGCTGTCAAGTCGTAGGAAGTTGTCAAGACCAACCGGCTGGTGAAAGTTTGAGGCGAGAGCAGGAGTGTGTCATGTGCCTGTCAGAGGAGAGGTCGGTTGTTTTTCTGCCATGTGCACATCAGGTGTTGTGTCCAAAATGCAATGACTGCCATGAGAAGCAAGGGATGAAAGACTGCCCTTCATGCAGGACATCAATCGAGTTTAGGATTCATGCTAAATTTCTTGGGCATTAG 2241 0.4266 MAEEMDKTVDDYEQVVQEEEKDCHYKRKSDEPSMDPDSPISYVDDDFPPYEFSIPPSFNDIDSFELGFDYETQEDDLNEVEDWSDPMATQLEELLMANLDAIFSNAIKKVVESGYTQERAETAISRKAIYSEGDPLTNIVYHTINVLKGKGNDSTFDVAFQNVKQLLHYTMVEMIGILCELRPSLTVTEAMWELLIHDLSIPRAIAAHDKLSDDVSKGETSANSAVPLSKSEVKSCDKTPDCSSSTGQKGSQECKSGPNSKVNSRKELALALRQKFLHMEKTKACGKGGVKLGKLTAVGGLIVEKRLKPPSETPNQKMKRGSSNAKGVKIAEGVCHVLTNDASVLTKGGSATKLPRKDAMSTSSTGKTTKAKNKLCSPDIQKIHDYRAGIPFDEVSGTYVPRDEKEEQILKLVSRVQELQDELQSWSDWTNKKVMQVADKLRKLQAESKSLKKETEAYRKDRKTLEENTEKRISEMENAIDTTKKQLESAAAATLVLQEKKSLLKKELDAAKSWAVKSMASHQEALEREQVAVKQAQSWETEKALLRDELENEKQKLCNLQEEIDKGKDHLAYAEGRLKKERATTESILAQAASIRKEREQYETLVKSEEDALRKKAASDLQEYVQSMVKIEKEMAMLRLKSDSKKATPSVKDDKESETLAMGSLQVVGSCQVVGSCQDQPAGESLRREQECVMCLSEERSVVFLPCAHQVLCPKCNDCHEKQGMKDCPSCRTSIEFRIHAKFLGH 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00816 746 Coils Coil 592 612 - -
Car04g00816 746 PANTHER OS05G0141500 PROTEIN 226 743 IPR046934 -
Car04g00816 746 PANTHER OS05G0141500 PROTEIN 9 241 IPR046934 -
Car04g00816 746 Coils Coil 434 493 - -
Car04g00816 746 ProSiteProfiles Zinc finger RING-type profile. 692 732 IPR001841 -
Car04g00816 746 Pfam Family of unknown function (DUF6592) 98 207 IPR046527 -
Car04g00816 746 Coils Coil 536 563 - -
Car04g00816 746 Coils Coil 621 641 - -
Car04g00816 746 Pfam Zinc finger, C3HC4 type (RING finger) 689 736 - -
Car04g00816 746 Coils Coil 402 422 - -
Car04g00816 746 SUPERFAMILY RING/U-box 686 738 - -
Car04g00816 746 MobiDBLite consensus disorder prediction 213 265 - -
Car04g00816 746 MobiDBLite consensus disorder prediction 349 372 - -
Car04g00816 746 MobiDBLite consensus disorder prediction 1 46 - -
Car04g00816 746 MobiDBLite consensus disorder prediction 238 263 - -
Car04g00816 746 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 678 741 IPR013083 -
Car04g00816 746 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RF298-RELATED 9 241 - -
Car04g00816 746 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RF298-RELATED 226 743 - -
Car04g00816 746 MobiDBLite consensus disorder prediction 356 372 - -
Car04g00816 746 Coils Coil 2 22 - -
Car04g00816 746 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00816 Car-Chr4 8073469 8077307 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00816 692 739 C3H Transcription Factor Family AT1G73950 47.917 7.11e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00816 - - mtr:MTR_1g089740 886.715