Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00813 ATGAAGGAAAAAGTGGATTCTGATTCACCTATTACAGTTCTTGAGGACTATTTCAAGAGTTCAGATTCAGAAACAAGTTCTTCCAAAGAACCTACGGTGGATTCTGAGTCTCATGATGAAATTTCAAAACCTGCTTCAAGGTGGCATTCATTTCTTCAATTGTTGAAAACAAGATCAAAGAAACAGGTACCTGCATTGCATCCTCTTAATGGACAAATTTCAAGAAGAATGAGCAGAAGCATGAGAGAGAGTGTTCTTCCAAGTTGTCTCAATCTCACAAATGCAACTTCAACCCCTTGTAGATCACCATGGAAGATCTTTACTCATCATGATATACAAGTTGCAACCAATTCTTTTAGCCAAGAAAATTTGATTGGAAAAGGTGGTTATGCTGAAGTTTACAAAGGGTGTTTGCCTAATAATCAATTAGTAGCAATCAAAAGGCTAACAAGAGGAACTGCTGATGAAATCATAGGAGATTTTTTATCAGAACTTGGTGTAATGGCGCATGTAAACCATCCCAATACTGCTAAGCTTGTTGGCTATGGAGTGGATGGTGGAATGTATCTTGTTCTTGAATTGTCAGAAAAAGGAAGTCTAGCTTCAGTGCTATATGGTTCCAAGGAGAAACTACCATGGTGTATTAGGCAAAAAATTGCATTAGGAACAGCCAAGGGTATATTATATCTTCATGAGGGTTGTCAAAAAAGATTTATCCATAGAGATATAAAGGCTGCAAATATATTGCTCACGGAGGATTTTGAGCCTCAGATTTGTGATTTCGGGTTAGCAAAATGGCTGCCAGAGAATTGGACTCACCATAACGTTTCAAAATTTGAAGGAACTTTTGGCTACCTTGCTCCTGAGTACTTGCTTCATGGCATAGTAGACGAGAAAACAGATGTATTTGCCTTTGGTGTATTACTATTAGAATTAGTTAGTGGACGAAGAGCACTTGATTATTCACAACAAAGCCTTGTTTTGTGGGCAAAACCATTGTTGAAAAAGAATGATATTATGGAGCTGATAGATCATTCACTAGCAGGTGAATTTGACTCTAGGCAGATGAACCTTATGCTTTTGACAGCGTCTTTATGCATACAACAGTCCTCCATTCGCCGACCCTCTATAAGACAGGTTGTGCAGCTTCTGAATGGAAACCTTAGCTGCTTCAAGGACATGAAGAAAATCCGATTGCCATTCTTTCGAAAAGTCTTTCGAGAAGAGCTCATTGATTCTGAATAG 1245 0.3839 MKEKVDSDSPITVLEDYFKSSDSETSSSKEPTVDSESHDEISKPASRWHSFLQLLKTRSKKQVPALHPLNGQISRRMSRSMRESVLPSCLNLTNATSTPCRSPWKIFTHHDIQVATNSFSQENLIGKGGYAEVYKGCLPNNQLVAIKRLTRGTADEIIGDFLSELGVMAHVNHPNTAKLVGYGVDGGMYLVLELSEKGSLASVLYGSKEKLPWCIRQKIALGTAKGILYLHEGCQKRFIHRDIKAANILLTEDFEPQICDFGLAKWLPENWTHHNVSKFEGTFGYLAPEYLLHGIVDEKTDVFAFGVLLLELVSGRRALDYSQQSLVLWAKPLLKKNDIMELIDHSLAGEFDSRQMNLMLLTASLCIQQSSIRRPSIRQVVQLLNGNLSCFKDMKKIRLPFFRKVFREELIDSE 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00813 414 ProSitePatterns Serine/Threonine protein kinases active-site signature. 238 250 IPR008271 GO:0004672|GO:0006468
Car04g00813 414 ProSitePatterns Protein kinases ATP-binding region signature. 125 147 IPR017441 GO:0005524
Car04g00813 414 Gene3D Transferase(Phosphotransferase) domain 1 196 398 - -
Car04g00813 414 Pfam Protein kinase domain 120 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g00813 414 PANTHER PROTEIN KINASE FAMILY PROTEIN 1 413 - -
Car04g00813 414 ProSiteProfiles Protein kinase domain profile. 119 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g00813 414 PANTHER OS08G0249100 PROTEIN 1 413 - -
Car04g00813 414 SMART serkin_6 119 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g00813 414 MobiDBLite consensus disorder prediction 16 42 - -
Car04g00813 414 SUPERFAMILY Protein kinase-like (PK-like) 97 384 IPR011009 -
Car04g00813 414 Gene3D Phosphorylase Kinase; domain 1 93 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00813 Car-Chr4 8042214 8045632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00813 107 386 Receptor kinase-like Gene Family AT1G53420 40.278 1.68e-65 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Car04g00813 Pkinase 3.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00813 - - gmx:100780587 713.761
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g00813 04 8042214 8045632 Car04g00813 04 8042214 8045632 ECH
Car01g00571 01 4721107 4725015 Car04g00813 04 8042214 8045632 ECH