Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00789 ATGGACTTGTACGGTCGGAGTCCCACGAGGAATGGATCGAATCCGGTAAATCAACATGAATGGCGTTCACCGGACGCTGTTCTTGGAGAGTCGATGTGGCATTTAACGCTtggtggtggtggtggtggtggtggtgAATCTTACCCGGAGAGACACGGTGTGCCCAATTGTGTGTATTACATGAGAACTGGGTTCTGTGGATATGGTGGAAGGTGTCGTTTCAATCACCCCCGTGATCGTGCTGCGGTTGCTGCGGCAGTTAGAGCTACAGGGGACTACCCAGAACGGCTGGGGGAACCTCCATGTCAGCAGTATTATTTAAAAACTGGAACCTGTAAATTTGGCGCGTCCTGTAAATTCCACCATCCCAAAAATGGAGGTGGATATTTAAGCCAAGCTCCACTAAATATTTACGGATACCCATTACGACCGGGTGAGAAAGAGTGCTCCTATTATTTGAAAACGGGGCAGTGCAAATTTGGCGTAACATGTAAATTCCATCATCCTCAACCTGCTGGAACGTCAATGCCAGCATCTGCACCTCAATTTTATCAACAGGTGCAGTCTCCAACTGTTCCTCTGCCTGACCAGTATGGAGGAGCTTCCACAAGCTTGAGAGTAGCTAGACCTCCTGTGTTACCTGGTTCATATGTACAAGGGGCTTATGGTCCTGTACTTCTTTCCCCAGGGGTTGTTCCATTTCCTGGATGGAGTCCTTATTCGGCTCCTGTGAGCCCTGTGTTATCTCCTGGTGCGCAACCTGCTGTTGGGGCTACTTCTCTATATGGAGTGACTCAGTTGTCGTCGTCAACCTCAGCTTTTGCTAGACCATATACTCCTCTTCCCTCCTCTCCTGGACCTTCAAGAAGCAATCTGCAGGAAAAAGTATTTCCTGAAAGACCCGGTGAACCAGATTGCCAATACTATCTGAGAACTGGGGACTGCAAATTTGGATTAGCTTGTCGATATCATCATCCACAGGACCAGGTTGCTGCACGACCACTTCTTAGTCCCATTGGTCTTCCTTTACGCCCGGGGGTACAGCCTTGTTCATTTTATTTGCAAAATGGGCACTGCAAGTTTGGCTCATCATGCAAGTTTGATCATCCTGTGGGGTCTATGAGATACAGTCCATCAGCATCTTCTCTTATCGACATTCCAGTTGCTCCATACCCAGTTGGGTCGTTACTGTCTAATCCGGTTCCAACATCTTCAGAGCTTGGGTCCAAAAGGGAATCCTTTTCAACCAGAATGCATTCTTCTGGAAATGGTTCTGGTACTTCCGGTGGTTTAATTTTTTCACAAGGCGGGTCTGTCTCGCTGTCTGATGTGCAACTCTCGAGGCAGAGTTCTGCTTCTACGAACGGCAGCAGAAGCAGCAGACAGAGTGACACTGAAATTGAAAGGAACGAGGTAGGTGTTGCTGTCAGCACCTATGCAATATTTTCAGATGTCAAGGATGCAACAGAAGCAGCTTTGGTTTTACACTGCCATTATAATTTGATAAAGAGAAAACTTAGGACAAAGCTCAACCATCAGGTTAAACTATATTTTTGA 1557 0.4618 MDLYGRSPTRNGSNPVNQHEWRSPDAVLGESMWHLTLGGGGGGGGESYPERHGVPNCVYYMRTGFCGYGGRCRFNHPRDRAAVAAAVRATGDYPERLGEPPCQQYYLKTGTCKFGASCKFHHPKNGGGYLSQAPLNIYGYPLRPGEKECSYYLKTGQCKFGVTCKFHHPQPAGTSMPASAPQFYQQVQSPTVPLPDQYGGASTSLRVARPPVLPGSYVQGAYGPVLLSPGVVPFPGWSPYSAPVSPVLSPGAQPAVGATSLYGVTQLSSSTSAFARPYTPLPSSPGPSRSNLQEKVFPERPGEPDCQYYLRTGDCKFGLACRYHHPQDQVAARPLLSPIGLPLRPGVQPCSFYLQNGHCKFGSSCKFDHPVGSMRYSPSASSLIDIPVAPYPVGSLLSNPVPTSSELGSKRESFSTRMHSSGNGSGTSGGLIFSQGGSVSLSDVQLSRQSSASTNGSRSSRQSDTEIERNEVGVAVSTYAIFSDVKDATEAALVLHCHYNLIKRKLRTKLNHQVKLYF 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00789 518 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 104 124 IPR000571 GO:0046872
Car04g00789 518 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 302 327 IPR000571 GO:0046872
Car04g00789 518 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 54 78 IPR000571 GO:0046872
Car04g00789 518 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 145 170 IPR000571 GO:0046872
Car04g00789 518 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 346 370 IPR000571 GO:0046872
Car04g00789 518 SUPERFAMILY CCCH zinc finger 145 171 IPR036855 GO:0046872
Car04g00789 518 SMART c3hfinal6 344 371 IPR000571 GO:0046872
Car04g00789 518 SMART c3hfinal6 300 327 IPR000571 GO:0046872
Car04g00789 518 SMART c3hfinal6 96 124 IPR000571 GO:0046872
Car04g00789 518 SMART c3hfinal6 143 170 IPR000571 GO:0046872
Car04g00789 518 SMART c3hfinal6 51 78 IPR000571 GO:0046872
Car04g00789 518 MobiDBLite consensus disorder prediction 444 461 - -
Car04g00789 518 ProSiteProfiles Zinc finger C3H1-type profile. 143 171 IPR000571 GO:0046872
Car04g00789 518 SUPERFAMILY CCCH zinc finger 305 330 IPR036855 GO:0046872
Car04g00789 518 MobiDBLite consensus disorder prediction 401 427 - -
Car04g00789 518 MobiDBLite consensus disorder prediction 275 294 - -
Car04g00789 518 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 32 1 398 - -
Car04g00789 518 SUPERFAMILY CCCH zinc finger 54 80 IPR036855 GO:0046872
Car04g00789 518 SUPERFAMILY CCCH zinc finger 346 375 IPR036855 GO:0046872
Car04g00789 518 PANTHER PROTEIN PHOSPHATASE RELATED 1 398 - -
Car04g00789 518 ProSiteProfiles Zinc finger C3H1-type profile. 96 125 IPR000571 GO:0046872
Car04g00789 518 ProSiteProfiles Zinc finger C3H1-type profile. 51 79 IPR000571 GO:0046872
Car04g00789 518 Gene3D - 299 381 - -
Car04g00789 518 Gene3D - 46 90 - -
Car04g00789 518 Gene3D - 94 180 - -
Car04g00789 518 ProSiteProfiles Zinc finger C3H1-type profile. 300 328 IPR000571 GO:0046872
Car04g00789 518 MobiDBLite consensus disorder prediction 1 21 - -
Car04g00789 518 MobiDBLite consensus disorder prediction 444 468 - -
Car04g00789 518 ProSiteProfiles Zinc finger C3H1-type profile. 344 372 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00789 Car-Chr4 7809738 7814638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00789 19 405 C2H2 Transcription Factor Family AT5G18550 54.054 5.57e-123 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Car04g00789 zf-CCCH 2.3e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00789 - - gmx:100812475 811.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g00789 04 7809738 7814638 Car04g00789 04 7809738 7814638 ECH