Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00787 ATGAGTGAAAAAAAGAAAGGGAAACTCCCTGATAGAGAATCCTTTTATAAGTACAACAACAATTTCATGAGagaagaagaagaagaagatgatgatgaaAATATAATCAGAGAGCAAGATCGTTTACTTCCAATAGCTAATGTTGGAAGGATTATGAAACAAATCTTGCCTCCAAATGCAAAAATATCAAAAGAAGCCAAAGAAACGATGCAAGAATGTGTGTCAGAGTTTGTTAGCTTTGTAACTGGTGAAGCTTCTGACAAGTGTCACAAGGAGAAACGCAAGACGGTGAACGGTGATGATGTTTGTTCGGCTTTTTCTACTTTAGGGTTTGATGACTATGCTGAACCATTGAAGAGGTATTTGAATAAATTTAGAGAATTGGATGTCCAAAGATCCAACCAAAATAAGGGTGGTAACATTAATTAG 429 0.3357 MSEKKKGKLPDRESFYKYNNNFMREEEEEDDDENIIREQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFVSFVTGEASDKCHKEKRKTVNGDDVCSAFSTLGFDDYAEPLKRYLNKFRELDVQRSNQNKGGNIN 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00787 142 PRINTS CCAAT-binding transcription factor subunit A signature 70 88 - -
Car04g00787 142 PRINTS CCAAT-binding transcription factor subunit A signature 89 107 - -
Car04g00787 142 PRINTS CCAAT-binding transcription factor subunit A signature 108 126 - -
Car04g00787 142 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5 20 140 - -
Car04g00787 142 Gene3D Histone, subunit A 29 141 IPR009072 GO:0046982
Car04g00787 142 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 42 105 IPR003958 -
Car04g00787 142 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 20 140 IPR027113 GO:0001228|GO:0006355|GO:0016602
Car04g00787 142 SUPERFAMILY Histone-fold 39 138 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00787 Car-Chr4 7787216 7787644 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00787 26 139 CCAAT-HAP3 Transcription Factor Family AT2G47810 69.565 1.52e-57 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Car04g00787 CBFD_NFYB_HMF 2.2e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00787 K08065 - gmx:100817274 203.371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g00787 04 7787216 7787644 Car04g00787 04 7787216 7787644 ECH