LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car04g00784	ATGGTCGAAACACGACGCGGTTCATCTTCTTCCTCCAAACGCCCTCTCTCTTCTCCTTCTCCTTCCAAAACCAAACGATCCAAGGTATCAGAAGATGCTTCATCTACAACCTTACCTTCTCTTCCGGTCAACGAATCTGCACCTCGAAACGAATCTGAGATACAACCTTCTGATCTACCACAAACGGCGTCGTTGAAGGTTGTTGATGGTGAAAACGACAAGTCCCCTTCTCTGCCTATCGAAGATGATCCTTTGGTGTCTCCTCAGTCTCCAGGTGAAACTGCAGAGAAATCAAAGGTTGCTGCTCCTGTGGTGCCTTGTAGAAAAAAACGCTCCGCGGTTAAATTGAGTCCTAAGGCTGAGTGGGGGAAGCTCATTTCTCAGTTTTCTCAGAATCCTCACGTGTCCATTAGTGATCCAATCTTCACTGTTGGTCAAGGTCGTCAGAGTAATTTGATGCTTAAAGATCCTACTGTTGGTAGTGTTTTGTGCAAGTTGAGCCATATAGAGCATGGAGGTTCATCAGTTGCCCTACTGGAAATCACAGGCGGTAAAGGCACAGTTCAAGTCAACGGCAAGACTTACCGAAGGAATGCCCGGCTGATTTTAAATGGAGGCGATGAGGTGGTTTTTGGTTCTTCAGGAAAGCATGCTTATATATTTCAGCAGCTCAAAAGTAACAATGTTTCTACTGCCGATTTACCTCCTGTGAGTATTTTAGAAGCCCAGAGTGCTCCGATAAATGGGATGCAAGTTGAAGCTAGATCTGGAGACCCTTCAGCTGTTGCTGGAGCATCGATATTGGCCTCTCTATCAAATATTCATAACGATTTATCTCTAGTTTCCCCGCCTGCTACAACTTGCAAGAAACAGAGTGCTGATATTTCATCTCTACCTTCTGGCCATGAGGATAATATCCCCGACAATGAAATGAAAGATACCACCAATGATAATGAATCGGCTGGAGCTTTTCCGTCTGGAAAAGCTGTTCCTGCATCCTCTACTAATGTTAATGACAATCCTAGCCTTGACACCATGGATGTTGATGCTGAAGTGGACACAGATGTTGGGAAGATGACTGCTGCTAATAACGAGTTGAGACCATTACTGTGCATGCTTGCCGGCTCAGGTTCTGAAATTGATATAAGTGGCAGCATTTCTAAGATATTAGAAGATCGAAGGGAATTAAGAGAACTCCTTAAAGATGTTGATACACCAATATTGGCATCCACCAGACAGCAGGCATTTAAGGACAGCCTACAACAGAGAATTCTCAATGCCGAGGATATTGATGTGTCCTTTGAAACTTTCCCATATTATCTAAGTGATACAACAAAGAATGTGCTGATTGCTTCTACATATATTCATTTGAAGTGCAAAGGCATTGGAAAATATGCTTCAGATCTCCCATCGGTGTCTCCACGGATATTGTTATCTGGTCCTGCAGGTTCAGAAATATATCAGGAGACTTTGTCCAAGGCACTTGCAAAGCATTTTGGTGCCAAACTACTGATTGTGGATTCTCTTTCACTGCCTGGTGGAACACCATCAAAGGAGGTTGATTCTCCCAAAGAAAGTTCAAAACCTGAAAGGCCATCTGTTATTTTGAAGAGATGTACTCAGGCTTCTACATTACATCATAAGAAACCCACTTCTAGTGTTGATGCTGAAATTATTGGTGGATCTACATTAAGTTCGCAGGCTATGCTGAAGCAAGAGGTTTCTACTGCATCATCAAAAGGCACTGCTCTTAAAAAAGGCGATCGAGTAAAATTTGTCGGTAACTTTCCACCTGCTGTCTCATCACTACAAAATTGTTCTTCAAGGGGACCAAGCTATGGCTTCCGGGGCAAAGTTGTACTTGCTTTTGAAGACAACGAGTCCTCAAAAATTGGAGTTAGGTTTGATAAATCAATTCCAGATGGAAATGATCTTGGAGGCCATTGCGAATATGATCATGGGTTCTTTTGTTATGCAAACCATTTACAACGAGTAGATAGTTCAGGAGGGGATGACTCCGACAAAGTTGCAATTAATGAAATCTTTGAGGTTGCTTCTAATCAATGTAAAAGTGGTTCACTTGTTTTGTTCATTAAAGATATAGAGAAGGCAATGGTTGGGAACTCAGATGTTTTGAAAAGTAAATTTGAAAGTCTGCCACAAAATATTGTGGTAATCGGCTCAAATACCCAGCTGGACAGTCGTAAGGAGAAGACCCATCCTGGGGGACTTCTGTTTACAAAGTTTGGGAGCAATCAGACAGCGCTACTTGATCTTGCTTTTCCGGATAACTTTAGTAAACTACATGATAGGAGCAAAGAAACCTCCAAAGTAATGAAGCAactcaaccgccttttcccaaacaaagtgacaatacagctgcctcagGATGAGACTTTACTTTCTGATTGGAAGCAGCAGTTAGATCGTGACATTGAAACTATGAAAGCTCATGCCAATGTTGTCAGCATTCGCTCGGTTCTCAACAGAATAGGATTGGATTGTTCTGACCTTGAGACTATCTGCATCAAAGATCAAACTCTAACTACTGAAAATGTGGAGAAGATCATTGGCTGGGCTATAAGTTACCATTTTATGCATTCATCTGATGTTTCTGCCAAAGAATCTAAGCTTGCGATATCTGCAGAGAGCATTAAGTATGGGTTTAACATTCTTCAAGGCATCCAAAATGAGAACAAGAACGGAAAAAAGTCATTGAAGGATGTGGTTACCGAGAATGAATTTGAGAAAAAGCTGCTTGGTGATGTTATTCCACCAACTGATATAGGGGTCACATTTGACGATATTGGAGCTTTAGAAAATGTGAAAGAAACTTTGAAGGAACTGGTCATGCTTCCTCTTAAAAGGCCTGAATTGTTTTGTAAAGGACAACTGACTAAGCCTTGCAAGGGAATATTGCTTTTCGGACCCCCTGGCACAGGAAAAACAATGCTCGCAAAGGCTGTAGCAACTGAAGCTGGAGCAAATTTCATCAATATTTCAATGTCTAGCATTACTTCCAAGTGGTTTGGTGAAGGAGAAAAATATGTCAAAGCAGTCTTCTCCCTAGCCAGCAAAATTGCTCCAAGTGTTATTTTTGTTGATGAGGTTGATAGTATGTTAGGGAGACGTGAAAATCCCGGTGAGCATGAGGCAATGCGTAAAATGAAGAATGAGTTTATGGTTAATTGGGATGGTCTACGTACAAAAGAAAAAGAGCGTATACTTGTTCTTGCTGCTACAAACAGGCCTTTTGATCTTGATGAGGCTGTTATTAGGAGGCTTCCGCGAAGATTGATGGTTGATTTGCCAGATGCTCCGAATAGAGGAAAAATTTTAAGAGTAATTTTAGCGAAAGAAGATTTGGCACCTGACGTTGATTTGGAAGCAATAGCAAATATGAGTGATGGATACTCGGGAAGTGACCTAAAGAATCTGTGTGTCACAGCAGCTCACTGCCCAATAAGGGAAATCTTGGAGAAGGAAAAGAAGGAGAGAAGCTTAGCATTGGCCGAGAACAAACCTTTACCTGGATTGTGTAGCAGTGCAGACATTCGCCCCTTAAAGATGGAAGATTTTAGATATGCACATGAACAGGTGTGCGCAAGCGTATCGTCGGAGTCAACAAATATGAATGAACTACAACAATGGAATGACCTATATGGAGAAGGTGGATCGAGAAAAATGAGATCTTTAAGCTACTTCATGTAA	3711	0.4115	MVETRRGSSSSSKRPLSSPSPSKTKRSKVSEDASSTTLPSLPVNESAPRNESEIQPSDLPQTASLKVVDGENDKSPSLPIEDDPLVSPQSPGETAEKSKVAAPVVPCRKKRSAVKLSPKAEWGKLISQFSQNPHVSISDPIFTVGQGRQSNLMLKDPTVGSVLCKLSHIEHGGSSVALLEITGGKGTVQVNGKTYRRNARLILNGGDEVVFGSSGKHAYIFQQLKSNNVSTADLPPVSILEAQSAPINGMQVEARSGDPSAVAGASILASLSNIHNDLSLVSPPATTCKKQSADISSLPSGHEDNIPDNEMKDTTNDNESAGAFPSGKAVPASSTNVNDNPSLDTMDVDAEVDTDVGKMTAANNELRPLLCMLAGSGSEIDISGSISKILEDRRELRELLKDVDTPILASTRQQAFKDSLQQRILNAEDIDVSFETFPYYLSDTTKNVLIASTYIHLKCKGIGKYASDLPSVSPRILLSGPAGSEIYQETLSKALAKHFGAKLLIVDSLSLPGGTPSKEVDSPKESSKPERPSVILKRCTQASTLHHKKPTSSVDAEIIGGSTLSSQAMLKQEVSTASSKGTALKKGDRVKFVGNFPPAVSSLQNCSSRGPSYGFRGKVVLAFEDNESSKIGVRFDKSIPDGNDLGGHCEYDHGFFCYANHLQRVDSSGGDDSDKVAINEIFEVASNQCKSGSLVLFIKDIEKAMVGNSDVLKSKFESLPQNIVVIGSNTQLDSRKEKTHPGGLLFTKFGSNQTALLDLAFPDNFSKLHDRSKETSKVMKQLNRLFPNKVTIQLPQDETLLSDWKQQLDRDIETMKAHANVVSIRSVLNRIGLDCSDLETICIKDQTLTTENVEKIIGWAISYHFMHSSDVSAKESKLAISAESIKYGFNILQGIQNENKNGKKSLKDVVTENEFEKKLLGDVIPPTDIGVTFDDIGALENVKETLKELVMLPLKRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKEKERILVLAATNRPFDLDEAVIRRLPRRLMVDLPDAPNRGKILRVILAKEDLAPDVDLEAIANMSDGYSGSDLKNLCVTAAHCPIREILEKEKKERSLALAENKPLPGLCSSADIRPLKMEDFRYAHEQVCASVSSESTNMNELQQWNDLYGEGGSRKMRSLSYFM	1236

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car04g00784	1236	Pfam	ATPase family associated with various cellular activities (AAA)	972	1101	IPR003959	GO:0005524\|GO:0016887
	Car04g00784	1236	SUPERFAMILY	SMAD/FHA domain	122	215	IPR008984	GO:0005515
	Car04g00784	1236	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	931	1209	IPR027417	-
	Car04g00784	1236	SMART	AAA_5	968	1105	IPR003593	-
	Car04g00784	1236	PANTHER	AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED	1	1236	-	-
	Car04g00784	1236	ProSitePatterns	AAA-protein family signature.	1075	1094	IPR003960	GO:0005524\|GO:0016887
	Car04g00784	1236	MobiDBLite	consensus disorder prediction	31	62	-	-
	Car04g00784	1236	MobiDBLite	consensus disorder prediction	1	102	-	-
	Car04g00784	1236	Gene3D	-	1104	1198	-	-
	Car04g00784	1236	Pfam	AAA+ lid domain	1125	1161	IPR041569	-
	Car04g00784	1236	Gene3D	-	930	1210	IPR027417	-
	Car04g00784	1236	CDD	AAA	937	1103	-	-
	Car04g00784	1236	MobiDBLite	consensus disorder prediction	1	24	-	-
	Car04g00784	1236	MobiDBLite	consensus disorder prediction	290	344	-	-
	Car04g00784	1236	PANTHER	P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN	1	1236	-	-
	Car04g00784	1236	MobiDBLite	consensus disorder prediction	329	343	-	-
	Car04g00784	1236	Gene3D	-	121	232	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car04g00784	Car-Chr4	7741745	7753539	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car04g00784	967	1172	Calmodulin-binding Proteins	AT3G56690	35.238	1.33e-30	129

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car04g00784	-		-	gmx:100801477	1913.27