Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00777 ATGAAATTCTGCAAGACTTATCAAGAGTACATGCGTGGACATGAGCAGAAGATGCTCCCTGTTGTTGGCTTCAAGAAGCTCAAAAAGATCATGAAAAAGTGCAGACGTTCATCTCAGTCCAGTAATTCCTGCCCTGATCAATGTCCAGTGTGCGACGGGACCTTTTTCCCTTCCCTTCTTAATGAAATGTCAGATATAGTGGGATGCTTTAATCAGCGTGCACAAAAATTGCTGGAGATACATCTTGCTTCTGGATTTAGAAAGTACATTCTCATGTTCAGAGGTCAATCAAAAAGGAATCATACTACTTTAATTCATGAAGGCAAAGATCTAGTTACATATGCATTGATAAACGCTGTTGCAATCCGCAAAATACTAAAGAAATATGATAAGATTCATTATTCCAAGCAAGGGCAATTATTCAAGTCACAAGTCCAGACTATGCACAAGGAAATTCTTCAGAGTCCCTGGCTTATTGAGCTTATGGCATTACATATCAACTTAAGGGAAACTAATGTCAAGTCAAGGACACCTGCATTATTCGATGGATGTTATCTCGCATTTAAGGATGGAAAACCATCACTTACTTGTGAGCTCTTTGATTCCATTAAAATTGATATTGACTTAACTTGCTCTATATGCTTGGACACGGTGTTTGATCCAGTTTCTCTGACTTGTGGCCACGTATTCTGCTTTAGTTGCGCATGCTCAGCTGCATCTGTTACTATTGTTGATGGACTTAAGGCAGCACATCCTAAAGAGAAATGTCCCTTATGCCGAGAAGCAGGAGTTTATGAAGATGTTGTGCACTTGGAAGAATTAAACATTCTGTTAGGCCAAAGATGCAAAGAGTACTGGGAGGAAAGACTTCAGATGGAAAGGGTAGAGAGGGTCAAGCAAGCCAAGGAGCATTGGGAAACACAATGTAGAGCGTTCATGGGCATCTAA 948 0.403 MKFCKTYQEYMRGHEQKMLPVVGFKKLKKIMKKCRRSSQSSNSCPDQCPVCDGTFFPSLLNEMSDIVGCFNQRAQKLLEIHLASGFRKYILMFRGQSKRNHTTLIHEGKDLVTYALINAVAIRKILKKYDKIHYSKQGQLFKSQVQTMHKEILQSPWLIELMALHINLRETNVKSRTPALFDGCYLAFKDGKPSLTCELFDSIKIDIDLTCSICLDTVFDPVSLTCGHVFCFSCACSAASVTIVDGLKAAHPKEKCPLCREAGVYEDVVHLEELNILLGQRCKEYWEERLQMERVERVKQAKEHWETQCRAFMGI 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00777 315 Pfam RING-type zinc-finger 211 243 IPR027370 -
Car04g00777 315 ProSitePatterns Zinc finger RING-type signature. 226 235 IPR017907 -
Car04g00777 315 ProSiteProfiles SPX domain profile. 1 143 IPR004331 -
Car04g00777 315 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 315 - -
Car04g00777 315 ProSiteProfiles Zinc finger RING-type profile. 211 260 IPR001841 -
Car04g00777 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 313 IPR013083 -
Car04g00777 315 SMART ring_2 211 259 IPR001841 -
Car04g00777 315 SUPERFAMILY RING/U-box 204 263 - -
Car04g00777 315 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 315 IPR033326 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00777 Car-Chr4 7675747 7679535 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00777 208 260 C3H Transcription Factor Family AT4G28270 41.379 7.07e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00777 K16275 - gmx:100803060 540.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g00777 04 7675747 7679535 Car04g00777 04 7675747 7679535 ECH
Car04g00777 04 7675747 7679535 Car03g02768 03 73184674 73187799 PCT