Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00749 ATGGTGTCGCTGAAACTTCAGAAGCGGCTCGCCTCTAGCGTCCTCAAGTGTGGTCGTGGCAAGGTTTGGCTTGACCCTAATGAGGTCAATGAAATTTCCATGGCCAATTCTCGCCAAAACATCAGAAAGTTGGTTAAGGATGGATTTATCATCAGGAAGCCAACTAAGATTCACTCCCGCTCTCGTGCTAGGCGTATGAAGGAGGCCAAGAGGAAGGGACGTCATTCTGGATATGGTAAGCGCAAGGGAACAAGAGAGGCAAGACTTCCCACCAAAATCCTTTGGATGAGGAGGATGCGTGTCCTTAGGAGGTTGCTCCGCAAGTACAGAGAAGCAAAGAAGATTGACAAACATATGTACCATGATATGTACATGAAGGTTAAGGGTAATGTCTTCAAGAACAAGAGAGTCCTAATGGAGAGTATTCACAAGTCTAAGGCTGAGAAGGCAAGAGAGAAGACATTATCTGATCAGTTTGAAGCCAAGAGGGCAAAGAATAAGGCTAGCAGGGAAAGGAAATTTGCCAGGAGAGAAGAACGCTTTGCTCAAGGTCCCGGTGAGAAGCCTGCCCCAGCTCCAGCTGTAGCTGCAACCCAACCAGCCCAAGCACCAAAGAAGTCCAAGAAGTAA 630 0.4762 MVSLKLQKRLASSVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKFARREERFAQGPGEKPAPAPAVAATQPAQAPKKSKK 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00749 209 Hamap 50S ribosomal protein L19e [rpl19e]. 3 149 IPR000196 GO:0003735|GO:0005840|GO:0006412
Car04g00749 209 SUPERFAMILY Ribosomal protein L19 (L19e) 3 144 IPR035970 GO:0003735|GO:0005840|GO:0006412
Car04g00749 209 PANTHER 60S RIBOSOMAL PROTEIN L19 1 209 IPR039547 GO:0003723|GO:0003735|GO:0022625
Car04g00749 209 SMART Ribosomal_L19e_2 3 146 IPR000196 GO:0003735|GO:0005840|GO:0006412
Car04g00749 209 MobiDBLite consensus disorder prediction 57 79 - -
Car04g00749 209 CDD Ribosomal_L19e_E 4 167 IPR033935 GO:0003735|GO:0022625
Car04g00749 209 Pfam Ribosomal protein L19e 4 145 IPR000196 GO:0003735|GO:0005840|GO:0006412
Car04g00749 209 Gene3D - 2 56 IPR015972 GO:0003735|GO:0005840|GO:0006412
Car04g00749 209 PANTHER RIBOSOMAL PROTEIN L19 1 209 - -
Car04g00749 209 MobiDBLite consensus disorder prediction 149 184 - -
Car04g00749 209 ProSitePatterns Ribosomal protein L19e signature. 7 26 IPR023638 -
Car04g00749 209 MobiDBLite consensus disorder prediction 149 209 - -
Car04g00749 209 Gene3D - 57 187 - -
Car04g00749 209 MobiDBLite consensus disorder prediction 57 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00749 Car-Chr4 7375668 7377910 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00749 1 209 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 85.167 1.80e-128 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00749 K02885 - ming:122093463 348.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g00749 04 7375668 7377910 Car04g00749 04 7375668 7377910 ECH