Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00728 ATGATGGAAACGAGTAACTCACCGCGAGTGTTTCGCGGTGTTCATTTTGTTCTATTTGGTTTTAATCCACTCACTGAAAGCAAGATACGATTCAAGCTTGTAAATGGTGGTGGAATTGATGCGGGGAAGTACAGTGGGAATTGCACTCATGTTATTGTTGATAACATTACTTATGACGATCCTGTTTGTGTTGCTGCAAGAAATGATGGAAAGAAGGTGGTTACTGCATTATGGGTTGAACACCGTGCTGATATTGGAACGTGTGTTAATATTAACTCGATTATGTACAGACCGCTTAAAGATTTAGATGGAATTCCGGGTGCAAAAAATTTGACTGTCTGCTTGACTGGCTATCTACGCCAGGATCGGGATGACATTATGACAATGGTTGAGCTGATGGGTGCACAGTTTTCTAAGCCGTTGGTGGCAACCAAGGTTACTCATCTTGTATGCTACAAATTTGAAGGGGAGAAGTACGAGCTTGCCAAGAGATTGGCCACAATAAAGCTAGTTAATCATCATTGGTTGGAAGATTGCTTAAAGAATTGGAAGATTCTTCCTGAAGAAAAATATTTCAAGAGTGGTTTTGAACTGGAGATGATGGAGGAAGAGGCTAAGGATTCCGAGGAAGAGGTTGAGGATTCCAAGCTGGAGCAATGCAGGGGAAGGAATAGAAGCAAAAGTCCCCTCGGTTCGAAATTTGGTACAGCTTTGACTCATGGAATGTCAAAATCTTTAAGAGAGGAGGCATCAAATGCCATCTCAGATTCTACTGGTCCACAGGTTTTGCCAAACACCAATAAGGGTAAAGACTCAACTACTACACCAAATAAGGACAATTCTGATCAAGATATAGACTTGCATAATATTGGTGACTCAAAAATAAGCCGCCAGGTTCCTGAAGCTTCTTGGCATTCTACATCGCGTCAGCCACCTGAATCATATGTTAAGACCATTGGGTCTAAAAATGCTGATTTTCCGAAGACATCTGGCTTCCAGGATCTTGGCCTTACTGAAAATACAAATTCACCGGTTCAAGGACCCAATCTGCATGATGACACTTTGGAGACCAAGAAGTTAAGTTGCTCGAGATCAACTTCTGCAAGTGCGGAAAGACTTGCCTGTTCAGATGAAAAGCTTGGTGCTACAAGTTACTCTAGGAAGAATCTAAAGGGATTTAACTTTTCGAGGGTATTAGACGAATGTAAAGACAGAGAAGGCAACAACCTTGAATCCTCTTCCACTAAGGCAGAAAAGGAAAGTGAGGGAATCAAATCTGCCTGTGTTGAAGGATCTGGGAAAGAAACTGGTGTTATTCAAAAGGGTCATAAAAATAATTTATTGCCTCAAAAGAGGACAAAAGAAGCTGCTTCTACCAAATTAAAATCAAGGAAAACTGCTGCTAATGCAAAATTGTCTATTGAAAGGACACCACTAGCAAATGGTAAATCTCAAGGATTAAAAGCGCCATCTGTGGTTGATGAGCCACCTGTGTCTGATGGATATCTTTCAGTTGACAAAGATGGTATAAATAGCTCAAACACTTACTTGATTTCTAAATCTGCAGCTTCTACCTCCAACTCACTGGCATTTGATAAGCCTGTCTCAAGAAATACAGAGTCTGCTCAATGTGATAATGCTTATCAGAATTCAGCACAAAGGGCTGTTCAGAGCTTAAGTAAGACTAAAATTAGTGGTGAGGCTGATATAACAGGTTTTGGAATGGGAAAAGGTGATAATGAAGCAAAGCAACTTAATGTCACTACAAATCTTGGTTGTTCATCACCAGGAAAGAAGTCAAAGAATGAAGGATCTACTGGTCTTGATAATTTAGATTTATGCAATGAAGAAAGCAATAAACTGATTAGAAAATCACCCCGTAAGAAGTCAGTTGCCAAGAGAACTTTGGGTTCTAGACCCAGAAAAGGTGTTACTACTAAACTGAAAAGTTCAGTTTGCTTGAATAAAACTGCTCAGCAAGATGAAGGTGTAAGTTCTTCCAGTGGAAGCCAAGAGATAGAAATTTCTGGCGCTAAAAAGCATCAGTCATCACCCCAAATCCTTGATGTTAATAAATTGATGGAGCAAGAAATGGTTAGTGAATGTGCAGAAGATGCTGGTGGCAAAACTAATATTTTGGATGACGAGACAGAGGCTCCAGATGACAAATGTGAGTATAAGTTGGGAATGGCTCCTGATGAAGAATTGGTTAATATTTCCAAAAAAGTAGACACCTCAACAGAAGAGAACTTGGAAGAAATTGACCATTTAAAAAAATGTGAAGAAGCAATGCCTCCTAAAAAAGTCACAAATGAAACTGGAAAACAGAAACTACGTTCACTGTTAGACTCAACCTCAAAGTTAAAAGTAAAGCATCAAGCAAAAAAACATCCTGCAAGTAGAACCAAGAAGACCACAGTTACAAAGAAATTAGTGAAATCTGAAGTGGCAGTATCTGAGGAGAAGATTGATAATGTGACAAGGGATGAGGCAGGGATAAATATCCTGAAAGAAATGTCTGTACCTTCTGATATAAGTGAGAACTCAAATGTACCAAGAAATAAGTCACAAAATTTTATTGAAGAGGAAAAGGAGAACAGACCAAATGAAAGAGAGCAAGGTTCAGTGGAGGGAAGAAGTGTTGTAAATCGAACTACTAAATCTAGTGTTACGCTAGCAAATATCACGTCTAAGAAAATGAAGCACAATCCATCTATATCAGGATTTAATGCAAAAGTAAAAACTGAAGCCACATGTTTTATATTAAGTGGGCATCGCCTACAGAGAAAGGAGTTTCAACAAGTAATCAAGCGTTTGAAAGGAAGGGTTTGCCGCGATTCTCATCAGTGGTCATATCATGCGACACACTTCATATCCCCGGACCCAATAAGGAGGACAGAGAAATTTTTTGCTGCTACTGCATCAGGAAGGTGGATTCTTAAAACTGATTTCTTAACTGACAGTAGCGAGGCAGGAAAGTTCATGCCAGAGGAGCCTTATGAGTGGCACAAGAATGGTCTCAGTGAGGATGGTGCCATCAATATGGAAGCTCCAAGAAAGTGGCGGCTGGTGAAAGAAAGAACAGGTCATGGTGCCTTTTATGGGATGCGTATTGTTGTATATGGTGATTGTTTTGCCCCACCTTTGGATACTCTAAAGCGCGTGGTAAAAGCTGGAGATGGAACAATATTAGCAACATCTCCACCTTATACCCGCTTTCTTGATACTGGGGTCGACTATGCCATAGTTAGCCCTGGTATGCCACGTGTTGATTTGTGGGTCCAAGAGTTCTTAAAACATGAGATACCTTGTGTTGTAGCAGACTACTTGGTCGAGTATGTCTGCAAGCCTGGGTTCTCCCTTGAAAGACATGTATTGTATGGCACTCATGCTTGGGCAGATAAGTCATTTGCAAAACTTCTAAGTAAGGCAGAGGAGATTATTGAGGTGGTCATTCCTGCTCCTGCTGAGGATTGCAATGATGGTGATGATGATGTAGCTTGCCGGGTATGTAGATCCCGGGAAAGAGGAGATGTTATGCTCATTTGTGGTGATGAAAGTGGTTCCGTTGGCTGTGGAATGGGTACCCATATCGATTGCTGCGATCCTCCGCTCACAGCTGTTCCTGAGGAGGATTGGTTCTGCCCAAAATGCATTAACACCCAAAAATGCTCAAAAAATCCCAATAAAAGGAAAAAGGGAGCATTATCTTCATCAAAGACCAAGTGA 3729 0.4071 MMETSNSPRVFRGVHFVLFGFNPLTESKIRFKLVNGGGIDAGKYSGNCTHVIVDNITYDDPVCVAARNDGKKVVTALWVEHRADIGTCVNINSIMYRPLKDLDGIPGAKNLTVCLTGYLRQDRDDIMTMVELMGAQFSKPLVATKVTHLVCYKFEGEKYELAKRLATIKLVNHHWLEDCLKNWKILPEEKYFKSGFELEMMEEEAKDSEEEVEDSKLEQCRGRNRSKSPLGSKFGTALTHGMSKSLREEASNAISDSTGPQVLPNTNKGKDSTTTPNKDNSDQDIDLHNIGDSKISRQVPEASWHSTSRQPPESYVKTIGSKNADFPKTSGFQDLGLTENTNSPVQGPNLHDDTLETKKLSCSRSTSASAERLACSDEKLGATSYSRKNLKGFNFSRVLDECKDREGNNLESSSTKAEKESEGIKSACVEGSGKETGVIQKGHKNNLLPQKRTKEAASTKLKSRKTAANAKLSIERTPLANGKSQGLKAPSVVDEPPVSDGYLSVDKDGINSSNTYLISKSAASTSNSLAFDKPVSRNTESAQCDNAYQNSAQRAVQSLSKTKISGEADITGFGMGKGDNEAKQLNVTTNLGCSSPGKKSKNEGSTGLDNLDLCNEESNKLIRKSPRKKSVAKRTLGSRPRKGVTTKLKSSVCLNKTAQQDEGVSSSSGSQEIEISGAKKHQSSPQILDVNKLMEQEMVSECAEDAGGKTNILDDETEAPDDKCEYKLGMAPDEELVNISKKVDTSTEENLEEIDHLKKCEEAMPPKKVTNETGKQKLRSLLDSTSKLKVKHQAKKHPASRTKKTTVTKKLVKSEVAVSEEKIDNVTRDEAGINILKEMSVPSDISENSNVPRNKSQNFIEEEKENRPNEREQGSVEGRSVVNRTTKSSVTLANITSKKMKHNPSISGFNAKVKTEATCFILSGHRLQRKEFQQVIKRLKGRVCRDSHQWSYHATHFISPDPIRRTEKFFAATASGRWILKTDFLTDSSEAGKFMPEEPYEWHKNGLSEDGAINMEAPRKWRLVKERTGHGAFYGMRIVVYGDCFAPPLDTLKRVVKAGDGTILATSPPYTRFLDTGVDYAIVSPGMPRVDLWVQEFLKHEIPCVVADYLVEYVCKPGFSLERHVLYGTHAWADKSFAKLLSKAEEIIEVVIPAPAEDCNDGDDDVACRVCRSRERGDVMLICGDESGSVGCGMGTHIDCCDPPLTAVPEEDWFCPKCINTQKCSKNPNKRKKGALSSSKTK 1242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00728 1242 ProSiteProfiles BRCT domain profile. 920 1002 IPR001357 -
Car04g00728 1242 MobiDBLite consensus disorder prediction 299 350 - -
Car04g00728 1242 ProSiteProfiles BRCT domain profile. 109 193 IPR001357 -
Car04g00728 1242 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 1 1218 - -
Car04g00728 1242 SMART PHD_3 1167 1219 IPR001965 -
Car04g00728 1242 MobiDBLite consensus disorder prediction 589 684 - -
Car04g00728 1242 Gene3D BRCT domain 99 225 IPR036420 -
Car04g00728 1242 SUPERFAMILY BRCT domain 919 1006 IPR036420 -
Car04g00728 1242 SUPERFAMILY BRCT domain 109 192 IPR036420 -
Car04g00728 1242 MobiDBLite consensus disorder prediction 245 274 - -
Car04g00728 1242 CDD BRCT_TopBP1_rpt7 919 992 - -
Car04g00728 1242 Pfam PHD-finger 1168 1220 IPR019787 -
Car04g00728 1242 Coils Coil 198 218 - -
Car04g00728 1242 MobiDBLite consensus disorder prediction 405 425 - -
Car04g00728 1242 Gene3D BRCT domain 1029 1130 IPR036420 -
Car04g00728 1242 Pfam twin BRCT domain 111 175 IPR001357 -
Car04g00728 1242 MobiDBLite consensus disorder prediction 441 494 - -
Car04g00728 1242 MobiDBLite consensus disorder prediction 589 613 - -
Car04g00728 1242 MobiDBLite consensus disorder prediction 203 355 - -
Car04g00728 1242 SUPERFAMILY BRCT domain 9 92 IPR036420 -
Car04g00728 1242 MobiDBLite consensus disorder prediction 857 874 - -
Car04g00728 1242 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 1 1218 IPR044254 -
Car04g00728 1242 Pfam BRCA1 C Terminus (BRCT) domain 923 988 IPR001357 -
Car04g00728 1242 Gene3D BRCT domain 911 1028 IPR036420 -
Car04g00728 1242 SMART BRCT_7 1030 1117 IPR001357 -
Car04g00728 1242 SMART BRCT_7 911 992 IPR001357 -
Car04g00728 1242 SMART BRCT_7 8 86 IPR001357 -
Car04g00728 1242 SMART BRCT_7 106 183 IPR001357 -
Car04g00728 1242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1131 1234 IPR013083 -
Car04g00728 1242 MobiDBLite consensus disorder prediction 644 684 - -
Car04g00728 1242 MobiDBLite consensus disorder prediction 275 291 - -
Car04g00728 1242 MobiDBLite consensus disorder prediction 844 879 - -
Car04g00728 1242 ProSiteProfiles Zinc finger PHD-type profile. 1165 1221 IPR019787 -
Car04g00728 1242 SUPERFAMILY FYVE/PHD zinc finger 1140 1220 IPR011011 -
Car04g00728 1242 ProSiteProfiles BRCT domain profile. 6 96 IPR001357 -
Car04g00728 1242 Gene3D BRCT domain 1 95 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00728 Car-Chr4 7171764 7179408 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00728 129 244 Core DNA Replication Machinery Family AT4G02110 62.069 2.48e-38 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Car04g00728 BRCT 9.2e-06 CL0459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00728 K10728 - qsu:112006859 984.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g00728 04 7171764 7179408 Car04g00728 04 7171764 7179408 ECH