LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car04g00699	ATGGTTCGAATAACCCATTTCCAATTCATTTTATTTCTTCTTTCATTGTTATACTTCAATTGCAGTTCAGAAATGCAGGGAGATTTTGACAAGTGGATATCTTGGAACGTGAAGGATTACCAGAAAAAGACAATTTTGGAAAACAAATTGAAAGTACTCAGTGCAACTGAACAGGGTCTTGATTTGAAGCTGAGGCAAGCTGAGAGTAAAATAGTTAGAATCACAGTTAACCAAAATGGTACTGCTGATTTCAAAACCATTACAGAAGCTATTAATAGCATTCCACTAAACAACACTAGAAGATATATTGTGTCCATTGCACCGGGTACTTACAGGGAGAAAATTACAATCCCCAAAAAAAAGCCGTTCATAACATTCTTAGGGGACGCGATGGACCGACCAACTATTACTGGAAATGATACAAAGGGTATGATTGGAAGAGATGGGACTGAATTGAAGACATTCAACACTTCAACAGTTGCTGTGGAAGCTCGGTATTTTATTGCCATCAACATTAATTTTGAGAACACTGCTAGGCATGACAATGCATCAAAAGAGGAACAAGGTGTTGCGCTTCGTGTGTCTGCAAACAAAACCGCTTTTTATAATTGCTCTTTCTATGGGGCTCAAGACACTTTATATGATCACAAAGGCCTTCACTACTTCAAAAATTGCTTAATTAAAGGCACTGTTGATTTCATCTTCGGCTATGGGAGGTCCTTTTACGAGAATTGCCATATACACAGCACAACGAAGACGAAGTCCTACATCACTGCTCAAAGGCGTTCGAAGAATACGTCAATGGCGAGTGGATTTTCCTTTAAAAATAGCAAGGTAACAGGTAGTGGACAGACTTATCTTGGAAGACCATGGGGAAATTATTCAAGAGTTGTTTTCTCTTACACCTACATGGACAATACTATTCTTCCCGAAGGATGGTCTGATTGGAATCACGAACACCGTTACTTGAATGCATATTATGGAGAGTACAAGTGTAGTGGGCCTGGCTCCAACTTATCGGAAAGAGTTCCGTGGGCTCGGAATCTAACGGACCAAGAGGCCCAGCCTTTTCTTGGGACCCATTTCATTGAAGGCAACACTTGGCTCATTAGCCCTTCTAATTCATCATCCACCTACTTCTGA	1143	0.4024	MVRITHFQFILFLLSLLYFNCSSEMQGDFDKWISWNVKDYQKKTILENKLKVLSATEQGLDLKLRQAESKIVRITVNQNGTADFKTITEAINSIPLNNTRRYIVSIAPGTYREKITIPKKKPFITFLGDAMDRPTITGNDTKGMIGRDGTELKTFNTSTVAVEARYFIAININFENTARHDNASKEEQGVALRVSANKTAFYNCSFYGAQDTLYDHKGLHYFKNCLIKGTVDFIFGYGRSFYENCHIHSTTKTKSYITAQRRSKNTSMASGFSFKNSKVTGSGQTYLGRPWGNYSRVVFSYTYMDNTILPEGWSDWNHEHRYLNAYYGEYKCSGPGSNLSERVPWARNLTDQEAQPFLGTHFIEGNTWLISPSNSSSTYF	380

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Car04g00699	380	Gene3D	-	70	375	IPR012334	-
Car04g00699	380	SUPERFAMILY	Pectin lyase-like	74	369	IPR011050	-
Car04g00699	380	ProSitePatterns	Pectinesterase signature 2.	227	236	IPR033131	-
Car04g00699	380	Pfam	Pectinesterase	74	366	IPR000070	GO:0030599\|GO:0042545
Car04g00699	380	PANTHER	PECTINESTERASE	20	370	-	-
Car04g00699	380	PANTHER	ACYL-COA THIOESTER HYDROLASE YBHC-RELATED	20	370	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Car04g00699	Car-Chr4	6849749	6851953	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car04g00699	74	375	Carbohydrate Esterase	AT5G47500	43.421	8.86e-88	268

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car04g00699	K01051		-	cit:102614801	477.248

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Car04g00699	04	6849749	6851953	Car04g00699	04	6849749	6851953	ECH
	Car03g02542	03	71322946	71325492	Car04g00699	04	6849749	6851953	PCT

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