Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00698 ATGGATAGCATGTACAAAACCAGTATTCATGTAACGAGAAGTTTATCAGATTGTGGCTTATCAGCAACAAATGTAAGTGAACAAGATATGGTAATGAAGAAAGGTCCATGGACAGAGGATGAGGACACTCTTCTTATGAACTATGTGTCCGTCCACGGCGAAGGTCATTGGAACTCCGTTGCTCGATGCTCAGGTCTTAAACGGAACGGAAAAAGCTGCAGACTAAGATGGTTGAACTATTTGCGTCCGAATGTTCGACACGGGAACATCACTCTCCAAGAACAGCTCTTGATTCTTGATCTCCATTCTCGTTGGGGAAATCGGTGGTCTAAGATAGCGGAACAATTACCGGGAAGAACAGACAATGAAATAAAGAACTACTGGAGGACTAGAGTGGTGAAACAAGCTAAGCAACTCAAATGTGATGTAAACAGCAAACAATTTAGGGACACTTTACGTTTTGTTTGGATTCCACGTCTCATAGAGAGGATTCAATCAAGTAGTGGAACTGCAATTCCTAATAATAATTCATATGGACAAAGACAAACCGCCATTAAAGCTCACAGTGAAACTTGTGGGACAACAAATCCTCTCATGTTGTCTGAGGTTTCGTCGTACTCGTCAGAGGTTGATGTTCTGTTACCTCACAGTCTCTCTGAATCAAACGTATCTTATGATTTAATGGATAGTGCGGAATTGGGATCAACGTGGCAGGAGTGGAACTGTTATGATATCCAACCATTTGAACAGAGTAATGGTTTTGGTGGTTCAGAATTGTGGACTGATGAAAACTTATATTTCTTGCAGCAGCAACTTGCTGATTTATGA 828 0.4118 MDSMYKTSIHVTRSLSDCGLSATNVSEQDMVMKKGPWTEDEDTLLMNYVSVHGEGHWNSVARCSGLKRNGKSCRLRWLNYLRPNVRHGNITLQEQLLILDLHSRWGNRWSKIAEQLPGRTDNEIKNYWRTRVVKQAKQLKCDVNSKQFRDTLRFVWIPRLIERIQSSSGTAIPNNNSYGQRQTAIKAHSETCGTTNPLMLSEVSSYSSEVDVLLPHSLSESNVSYDLMDSAELGSTWQEWNCYDIQPFEQSNGFGGSELWTDENLYFLQQQLADL 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00698 275 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 136 IPR017930 -
Car04g00698 275 CDD SANT 36 81 IPR001005 -
Car04g00698 275 Gene3D - 91 132 - -
Car04g00698 275 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 85 IPR017930 -
Car04g00698 275 Gene3D - 33 86 - -
Car04g00698 275 ProSiteProfiles Myb-like domain profile. 82 132 IPR001005 -
Car04g00698 275 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 21 269 IPR044676 GO:0003700|GO:0006355|GO:0043565
Car04g00698 275 Pfam Myb-like DNA-binding domain 34 81 IPR001005 -
Car04g00698 275 Pfam Myb-like DNA-binding domain 88 130 IPR001005 -
Car04g00698 275 SUPERFAMILY Homeodomain-like 32 128 IPR009057 -
Car04g00698 275 CDD SANT 91 130 IPR001005 -
Car04g00698 275 ProSiteProfiles Myb-like domain profile. 29 81 IPR001005 -
Car04g00698 275 PANTHER MYB TRANSCRIPTION FACTOR-RELATED 21 269 - -
Car04g00698 275 SMART sant 86 134 IPR001005 -
Car04g00698 275 SMART sant 33 83 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00698 Car-Chr4 6841112 6842421 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00698 21 272 MYB Transcription Factor Family AT2G47190 48.077 1.10e-77 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car04g00698 Myb_DNA-binding 1.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00698 K09422 - gmx:778040 337.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g00698 04 6841112 6842421 Car04g00698 04 6841112 6842421 ECH