Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00697 ATGACCCCAACAACTGAAACCGTCAATCAACAAACAAAGCCAACTCTAACACGTTTCTTCACAGCCTCACTCATGAGAGTTATGAAAGATGTGTCTACAAAACTCAACCAATTAAACGAGACGGACCTAAGAAAGGGTCCATGGACATTAGAAGAGGACACCATTCTCGTTAATTACATTACAACCCACGGTGAAGGTCATTGGAATACTGTCGCATGCTGTGCAGGTCTGAGGAGAAGTGGGAAAAGTTGCAGATTAAGGTGGCTAAACTATCTGCGTCCCGATGTGCGGCGTGGAAATATCACACTCCAAGAACAGATATTGATTCTTGACCTCCACTCTCGTTGGGGCAATAGGTGGTCGAAAATTGCACAGCATCTACCAGGAAGAACAGACAATGAAATAAAAAATTATTGGAGGACGAGAGTGATGAAGCAAGCAAAGCAACTCAAATGTGATGTCAACAGTAAACAGTTCAGAGACATATTGCGTTACGTGTGGATGCCCCGTTTGCTCGAACGGGTTCAATCCGATCCAAACGGACCCGATGACATTCTTCCCCGAAACGCTATGCACAATTCAGTTTTGGAAACAGAGGGGCCAAAACAGAACAACTCCTCAAGTGTACTCAGTAGTACTTCCTCAGACTCATCGGTGGAATTCCAAGTTCCTTCGAAATTGGCCCAAAATGATTCTTTGGAGATGTTGGGCCATGATGACCCGGCCCAAAAAGGCTCCGAATTATGTTCCAGTTTTAATAACCAAGTGGGGAATAATGGTGGTGGCGGCGACTCATTGGAGAGTTTGTGGAACGACGAAAGCATGTGGTTTTTGCAACAACTCTCTGATGATCTCCAAATAAAATACAATTCCTTTGCGTGA 882 0.4444 MTPTTETVNQQTKPTLTRFFTASLMRVMKDVSTKLNQLNETDLRKGPWTLEEDTILVNYITTHGEGHWNTVACCAGLRRSGKSCRLRWLNYLRPDVRRGNITLQEQILILDLHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVMKQAKQLKCDVNSKQFRDILRYVWMPRLLERVQSDPNGPDDILPRNAMHNSVLETEGPKQNNSSSVLSSTSSDSSVEFQVPSKLAQNDSLEMLGHDDPAQKGSELCSSFNNQVGNNGGGGDSLESLWNDESMWFLQQLSDDLQIKYNSFA 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00697 293 CDD SANT 102 141 IPR001005 -
Car04g00697 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 42 92 IPR017930 -
Car04g00697 293 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 30 284 IPR044676 GO:0003700|GO:0006355|GO:0043565
Car04g00697 293 MobiDBLite consensus disorder prediction 246 265 - -
Car04g00697 293 ProSiteProfiles Myb-like domain profile. 93 143 IPR001005 -
Car04g00697 293 SMART sant 97 145 IPR001005 -
Car04g00697 293 SMART sant 44 94 IPR001005 -
Car04g00697 293 CDD SANT 47 92 IPR001005 -
Car04g00697 293 Gene3D - 102 143 - -
Car04g00697 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 93 147 IPR017930 -
Car04g00697 293 MobiDBLite consensus disorder prediction 197 222 - -
Car04g00697 293 Pfam Myb-like DNA-binding domain 45 92 IPR001005 -
Car04g00697 293 Pfam Myb-like DNA-binding domain 98 141 IPR001005 -
Car04g00697 293 PANTHER MYB TRANSCRIPTION FACTOR 30 284 - -
Car04g00697 293 Gene3D - 45 97 - -
Car04g00697 293 ProSiteProfiles Myb-like domain profile. 40 92 IPR001005 -
Car04g00697 293 SUPERFAMILY Homeodomain-like 42 139 IPR009057 -
Car04g00697 293 MobiDBLite consensus disorder prediction 235 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00697 Car-Chr4 6828116 6830115 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00697 42 177 MYB Transcription Factor Family AT1G48000 73.529 4.21e-76 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car04g00697 Myb_DNA-binding 4.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00697 K09422 - gmx:778065 298.13