Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00694 ATGAGGCACTCTTTTATTTTATCACTATCATTCTCTATATATTTTCTAACTTTATTTCTTTCAATAGAAGCTAGACACCATTTCCATACAAAACACAAACACTACTCACATTTTCATAATAATTCATCTGAATTTTCACTTCCTCCTTCTTCACTACCTTCACCTTCTAGTTCTAGTGTTCCTGAAGAAGCTCCTAGCCCTGCCCCTGCCAGTGACCACGAGAGTTACAAAAATGCATCCGGCTTATTCGATGTTCGAACATTCGGCGCAATTGGAGATGGAATAACTGATGATACAGAATCAATCAAAATGGCATGGGACACTGCTTGTCAAAGTGAATTAGCACTTAATGTTATCTTTGTTCCTCATGGTTTTTCCTTCATTGTTCAATCTACTATCTTTACAGGTCCTTGTAAAGGTGGCTTAGTATTAAAGGTTGATGGCACTCTTATGACACCTGATGGACCTGAATCATGGCCAAAAAACAACAGTAGGCGTCAATGGTTAGTTTTTTATAGAGTCAATGGAATGTCACTTGAAGGAAGTGGTTCAATTGATGGCAGAGGACAAAAATGGTGGGACCTTCCTTGTAAGCCTCATAAGGGACCTAATGGAACAACATTACCAGGACCATGTGACAGCCCAATTGCCATAAGGTTTTTCATGAGTTCAAACTTGAGTGTACAAGGACTTAGGATAAAAAACAGTCCACAATTCCATTTCAGATTTGATGGCTGCCAAAGTGTACATGTTGAATCAATCTTCATAACAGCTCCAGCATTAAGCCCCAACACTGATGGAATACACATTGAAAATACCAATGATGTGAAAATATATAATTCTATCATTTCCAATGGTGATGACTGCGTATCCATTGGGTCTGGTTGCTATGATGTTGATATAAAAAACATCACATGTGGACCAGGTCATGGGATTAGCATTGGTAGTTTGGGAAACCACAACTCTAGAGCATGTGTATCAAACATTACAGTGAGGGATTCAGTTATAAAAGTATCAGATAATGGTGTTAGAATTAAGACATGGCAAGGTGGATCAGGATCAGTATCAGGAGTAACATTCAGTAATATTCACATGGACAATGTAAAAAATCCAATTATAATTGACCAATTTTACTGCCTCAGTAAAGAATGCAGCAACAAAACCTCTGCAGTTTTTGTATCAGATATAGTTTACACAAATATAAAGGGAACTTATGATATAAGACACCCTCCTATGCATTTTGCATGCAGTGACTCTGTCCCTTGCACAAACTTGACTCTCTCAGATATTGAGCTTCTTCCTTCTCAAGGAGATATAGTGAATGATCCTTTTTGTTGGAATGCTTATGGAAATTCAGAGGCACTAACCATTCCTCCAGTTTTTTGCTTGCTTGATGGAATTCCTCAGTCTATTTCAGACAATGACATTGATCATTGCTGA 1440 0.3785 MRHSFILSLSFSIYFLTLFLSIEARHHFHTKHKHYSHFHNNSSEFSLPPSSLPSPSSSSVPEEAPSPAPASDHESYKNASGLFDVRTFGAIGDGITDDTESIKMAWDTACQSELALNVIFVPHGFSFIVQSTIFTGPCKGGLVLKVDGTLMTPDGPESWPKNNSRRQWLVFYRVNGMSLEGSGSIDGRGQKWWDLPCKPHKGPNGTTLPGPCDSPIAIRFFMSSNLSVQGLRIKNSPQFHFRFDGCQSVHVESIFITAPALSPNTDGIHIENTNDVKIYNSIISNGDDCVSIGSGCYDVDIKNITCGPGHGISIGSLGNHNSRACVSNITVRDSVIKVSDNGVRIKTWQGGSGSVSGVTFSNIHMDNVKNPIIIDQFYCLSKECSNKTSAVFVSDIVYTNIKGTYDIRHPPMHFACSDSVPCTNLTLSDIELLPSQGDIVNDPFCWNAYGNSEALTIPPVFCLLDGIPQSISDNDIDHC 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00694 479 Pfam Glycosyl hydrolases family 28 114 433 IPR000743 GO:0004650|GO:0005975
Car04g00694 479 ProSitePatterns Polygalacturonase active site. 303 316 IPR000743 GO:0004650|GO:0005975
Car04g00694 479 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 7 469 - -
Car04g00694 479 SMART pbh1 223 272 IPR006626 -
Car04g00694 479 SMART pbh1 273 294 IPR006626 -
Car04g00694 479 SMART pbh1 326 347 IPR006626 -
Car04g00694 479 SMART pbh1 296 316 IPR006626 -
Car04g00694 479 SMART pbh1 355 376 IPR006626 -
Car04g00694 479 MobiDBLite consensus disorder prediction 46 64 - -
Car04g00694 479 Gene3D - 68 461 IPR012334 -
Car04g00694 479 PANTHER - 7 469 - -
Car04g00694 479 SUPERFAMILY Pectin lyase-like 79 465 IPR011050 -
Car04g00694 479 MobiDBLite consensus disorder prediction 46 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00694 Car-Chr4 6797768 6800456 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00694 80 479 Glycoside Hydrolase AT1G02460 73.945 0.0 636
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00694 - - gmx:100776338 803.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g00694 04 6797768 6800456 Car04g00694 04 6797768 6800456 ECH
Car01g00901 01 8137763 8145487 Car04g00694 04 6797768 6800456 ECH
Car03g02839 03 73764964 73773117 Car04g00694 04 6797768 6800456 PCT