Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00686 ATGGAAGCTAGATTGGGTGATGAAGCTTATCATTTTTATGGTGTTGGTGGTTCATCTGATTTGAGTGGTATGAGGAGAAGGTCTGGAGAATGGAATTTGAATGATTGGAGATGGGATGGTGATTTGTTCATAGCTAACCGTGTGAATCCGGTGTCAGCGGATGTTCTGGGAGTGGGACAACAATTTTTCCCTCTCGGGTCTGGGATCCACCCGGTGGCTGGGGTTTCCTCCAACGCTTCTTCTTCGTGCTCCGAGGAAGGAGATCTTGAGAATCCCAAAAGGAGCAACGAAGGGGAGAGGAAAAGGAGAGTTATTGTTTTGGAAGATGATGGTTTGAATGAGGAAGCAGGTGGCCTTAGTTTAAAGCTTGCCGGACATGCTTCACCGGTGGTGGAAAGGGAGATTGCAAACTGGGATGGTATGAATGGAAAAAAGAGCAGAGTAGCTGGAGGTGCTTCAAATCGAGCTGTTTGTCAGGTTGAAGATTGTGGCGCAGATCTGAGCCGAGCTAAGGATTATCACAGACGTCATAAAGTTTGTGAAATGCATTCTAAGGCCAGTAGGGCACTTGTGGGAAATGCAATGCAGAGGTTTTGTCAACAGTGTAGTAGGTTTCACATACTTCAAGAGTTCGATGAAGGAAAGAGAAGCTGTCGAAGGCGCTTGGCTGGCCATAATAAAAGGAGACGGAAAACAAATAATGAAGCTGTTCCTAATGGAAATTCAATAAATGATGATCAAACTAGTAGTTATCTGTTGATAAGTTTATTGAAGATACTTTCAAATATGCATTCTGACAGATCAGATCAGAATACAGATCAGGATTTACTAACTCATCTTGTAAGGAGTCTTGCTAGTCAGAATGATGAACAAGGGAGCAAGAACTTGTCAAACCTTTTGCGGGAACAAGATAATTTGTTGAGAGAAGGGGGTTCTTCTAGGAAATCAGAGATGGTGTCAGCTTTATTTTCCAACAGTTCTCAAGGCTCTCCAACTGTTATAAGACAACATCAAACTGTATCCACGAATGAAATGCAACACGAAATGATGCATACACATGATATTATGGCCTCTGATCATCACATCCTGTCTTCAATAAAACCCAGCATTTCAAACAGTCCTCCAGCTTACTCAGAAGCCAGAGATAGTAGTGCACAAATAAAGACAAATAATTTTGATTTGAATGACATATATATTGACTCAGATGATGGCACGGAAGATCTAGAAAGATTGCCTGTTTCTACAAATCTTGGCACTAGCTCTGCTGATTACCCATGGATACGACTAGATTCTCATCAGTCAAGTCCACCTCAAACAAGTGGAAATTCGGATTCTGCATCTGCCCAGTCTCCTTCTAGTTCTAGTGGAGAAGCTCAGAGTCGCACAGACAGAATTGTTTTTAAACTCTTTGGTAAAGAGCCAAATGATTTTCCTCTTGTACTTAGAGCACAGATTCTTGATTGGTTATCCCACAGTCCTACTGATATCGAGAGCTACATACGGCCCGGTTGTATTGTTTTGACTATTTATCTGCGTCAGACTGAGGCTGTGTGGGAGGAACTTTGCTGTGATCTGAGTTCCAGTTTGAGTAAGCTGCTGGATGTCTCAGATGATGTGTTTTGGAGAACTGGATGGGTTCACATCAGGGTGCAGCATCAAATGGCATTCATTTTCAATGGTAAAGTTGTCATAGATACATCACTACCTTTTAGAAGTAACAATTATAGCAAGATTTGGACTGTAAGTCCAATTGCTGTACCAGCATCAAAGAGAGCTCAATTTTCTGTTAAAGGTGTCAACCTGATGCGCCCTGCCACAAGGTTAATGTGTGCTTTCGAAGGAAAATATCTAGTCTGTGAAGATGCTCGTGAGTCAACGGATCAATACTCCAAGGATCTTGACGAACTTCAGTGCATCCAATTTTCATGTTCTGTCCCTGTGGCAAATGGAAGAGGATTTATTGAGATTGAGGACCAGGGTTTGAGTAGCAGTTTCTTTCCTTTCATAGTGGCAGAGGAGGATGTTTGCTCAGAGATCCGTGTGCTTGAGCCTCTACTGGAATTAAGTGAAACTGATCGAAATATTGAAGGGACTGGAAAAATTAAAGCCCACAGTCAAGCTATGGATTTCATTCATGAAATGGGCTGGCTTCTTCACAGAAGCCAATTAAAATATAGGATGGTTCACTTGAACACTGGTGTAGATCTCTTTCCATTAGAACGGTTCACGTGGCTTATGGAGTTTTCCATGGACCATGATTGGTGTGCAGTGGTGAAAAAGCTGTTGAACCTACTGCTTGATGAAACTGTGAACAAAGGAGATCACCCTAATCTGCATCAAGCACTTTCAGATATGGGCCTCCTTCACAGAGCTGTAAGGAGAAATAGCAAGCAGTTAGTGGAGCTGCTTTTAAGATATGTTCCTGAAAGTACATCTGATAAACTAAAACCCACAGGCAAGGCACTGGTTGATGGAGAGAATCATTGCTTCTTGTTTAGACCTGATGCTGTTGGTCCTGCTGGTTTGACACCACTCCATATAGCAGCAGGGAAAGATGGTTCCGAGGATGTACTGGATGCTCTGATTAATGATCCTTGCATGGTGGGAATTGAGGCATGGAAGAATGCTCGTGACAGCACAGGCTCCACACCCGAGGATTATGCACGATTGCGCGGCCATTATACTTACATTCACTTGGTGCAGAAAAACCTTAACAAGAGACAAGGAGCAGCTCATGTGGTGGTTGAGATTCCCAGAAATCCGGCTGAGAGTTATACAAACCCAAAGCAAAATGAGTCGTTCACTAGCTTTGAGATTGGAAAAGCTGAAGTAAGACGTGGCCAAGGCCACTGTAAACTTTGTGATTCTAAAATTTCTTGTAGAACTGCAGTGGGAAGGTCTATGGTATACAGACCTGCAATGCTCTCTATGGTGGCCATAGCAGCAGTATGTGTTTGTGTGGCACTTCTGTTTAAAAGTTCACCTGAAGTTCTATACATGTTCCGACCCTTCAGATGGGAATCGTTGGATTTTGGAACAAGCTAA 3045 0.4282 MEARLGDEAYHFYGVGGSSDLSGMRRRSGEWNLNDWRWDGDLFIANRVNPVSADVLGVGQQFFPLGSGIHPVAGVSSNASSSCSEEGDLENPKRSNEGERKRRVIVLEDDGLNEEAGGLSLKLAGHASPVVEREIANWDGMNGKKSRVAGGASNRAVCQVEDCGADLSRAKDYHRRHKVCEMHSKASRALVGNAMQRFCQQCSRFHILQEFDEGKRSCRRRLAGHNKRRRKTNNEAVPNGNSINDDQTSSYLLISLLKILSNMHSDRSDQNTDQDLLTHLVRSLASQNDEQGSKNLSNLLREQDNLLREGGSSRKSEMVSALFSNSSQGSPTVIRQHQTVSTNEMQHEMMHTHDIMASDHHILSSIKPSISNSPPAYSEARDSSAQIKTNNFDLNDIYIDSDDGTEDLERLPVSTNLGTSSADYPWIRLDSHQSSPPQTSGNSDSASAQSPSSSSGEAQSRTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPTDIESYIRPGCIVLTIYLRQTEAVWEELCCDLSSSLSKLLDVSDDVFWRTGWVHIRVQHQMAFIFNGKVVIDTSLPFRSNNYSKIWTVSPIAVPASKRAQFSVKGVNLMRPATRLMCAFEGKYLVCEDARESTDQYSKDLDELQCIQFSCSVPVANGRGFIEIEDQGLSSSFFPFIVAEEDVCSEIRVLEPLLELSETDRNIEGTGKIKAHSQAMDFIHEMGWLLHRSQLKYRMVHLNTGVDLFPLERFTWLMEFSMDHDWCAVVKKLLNLLLDETVNKGDHPNLHQALSDMGLLHRAVRRNSKQLVELLLRYVPESTSDKLKPTGKALVDGENHCFLFRPDAVGPAGLTPLHIAAGKDGSEDVLDALINDPCMVGIEAWKNARDSTGSTPEDYARLRGHYTYIHLVQKNLNKRQGAAHVVVEIPRNPAESYTNPKQNESFTSFEIGKAEVRRGQGHCKLCDSKISCRTAVGRSMVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYMFRPFRWESLDFGTS 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00686 1014 ProSiteProfiles Zinc finger SBP-type profile. 155 232 IPR004333 GO:0003677
Car04g00686 1014 MobiDBLite consensus disorder prediction 317 333 - -
Car04g00686 1014 MobiDBLite consensus disorder prediction 76 100 - -
Car04g00686 1014 Gene3D - 149 219 IPR036893 GO:0003677|GO:0005634
Car04g00686 1014 SUPERFAMILY SBT domain 156 236 IPR036893 GO:0003677|GO:0005634
Car04g00686 1014 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 18 1013 IPR044817 GO:0003677
Car04g00686 1014 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 18 1013 - -
Car04g00686 1014 MobiDBLite consensus disorder prediction 365 384 - -
Car04g00686 1014 SUPERFAMILY Ankyrin repeat 756 899 IPR036770 -
Car04g00686 1014 Pfam SBP domain 158 231 IPR004333 GO:0003677
Car04g00686 1014 MobiDBLite consensus disorder prediction 222 244 - -
Car04g00686 1014 MobiDBLite consensus disorder prediction 427 460 - -
Car04g00686 1014 Gene3D - 719 906 IPR036770 -
Car04g00686 1014 MobiDBLite consensus disorder prediction 309 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00686 Car-Chr4 6752234 6760333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00686 1 1014 SBP-box Gene Family AT3G60030 54.255 0.0 962
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Car04g00686 SBP 5.5e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00686 - - gmx:100809806 1652.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g00686 04 6752234 6760333 Car04g00686 04 6752234 6760333 ECH