Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00684 ATGAACGGAAAAGTGCTTGTTTCTGGTGTATCCATCATTCTTGTGGTGGGTGTTGCCATTGGAGTTGTAGTTGTTGTTAACAAAAAGGATAGTAGTGATCCTGAATTAGCAGCACATCAAAAAAATTTGAAATCCATTTGTCAAGTAACTGAAAATCCACAACTTTGTCATGACACTCTTAACTCTGTTAAACCCGCCAATTCCTCTGATCCAACAGCTTATTTTGCAGCTGCTGTTGCAGCAAGTGCGAAAAGCGTTATAGGTGCATTAAATATGAGTGATAGGTTAACAATTGAACATGGAGACAAAAATCCTGGTGTCCATATGGCCCTTGATGATTGCAAAGATTTAATGGAATTCGCTCTTGATAGTCTCGAAGCATCAGCTAATTTAGTTCGTGATAACCACATTCAAGCGATTCATGATCAAATACCTGACTTTAGGAATTGGTTGAGTGCTGTTATCTCCTACCAACAATCATGCACGGAAGGGTTTGATAGCGACACCAAAGGTGAGGACCAGGTGAAGGAACTCTTGAAAACAGAAAGTTTGGACCAAATGGAAAAACTTACTGGAATGACACTTGACATTGTAACTAGTATGACTCACATCCTCCAAACTTTCGACTTGAAAATGGATTTGAATCCAGCTTCTCGTCGTCTTTTGGATGTTAATGAACTAGATAACGAAGGATTGCCCACGTGGTTCTCAATTTCTGATCGTAAGTTATTGTCTAAGACAAACAACGGTGGAAATCCTCCACCAAACGTGGTTGTTGCTAAAGATGGTAGTGGTAAATTTAAAACAGTTAAAGAGGCTATTGATTCCTATCCTAAAGACTTCAAAGAAAGATACATTATATATGTTAAGGCTGGTGTCTACGACGAGTATATCACTATTCCCAAAAAGTCAATAAATATTCTTATGTATGGCGATGGTCCTACAAAGACCATCGTCACCGGTCACAAAAACTTTGTAGATGGTGTCAAGACGATGCAAACAGCCACATTTGCAAATGTTGCAAATGGATTCATTGCAAAGTCAATGGCATTCGAGAACACAGCAGGACCAGAAAAACACCAAGCAGTAGCATTTAGAAACCAAGGAGACATGACAGCATTCTTTGATTGTGCAATGCACGGTTACCAAGACACATTATACGTTCAAACAAATCGACAATTCTACCGCAACTGTGAAATCTCTGGTACAGTGGACTTCATATTTGGTGCATCTCCAACGTTAATCCAAAACTCTAAAATCGTCATAAGAAAGCCAGGACCTAATCAATTCAACACAGTAACAGCGGACGGAACAAAGCAAAGAAGCATGGCTACAGGAATTGTACTCCAAAACTGTGAAATCGTTGCAGAAAGTGCTTTGCAACCGGTTAGATTTGAATTCAAATCATATTTGGGTAGGCCATGGAAAGAATATTCTAAGACAGTTGTTATGGAATCAAATATTGGTGATTTAATTCAACCAGAAGGATGGAGTGTTTGGGATGGAACTCAATTTCTTGACACATTGTATTATGCTGAATATGCTAATACTGGACCTGGTGCTGATGTTTCTAAAAGGGTTAACTGGAAAGGTTATCACCCTAATATTAATTCTAATGAAGCTGCACAATTTACTGCAGGACAATTCCTTAGAGCTGGACCAACTGGAAAAGCTGATGATTGGTTGAAGGCTACTGGTATTCCTTATACCATTGGCTTCACTAAAGCTTAA 1731 0.3894 MNGKVLVSGVSIILVVGVAIGVVVVVNKKDSSDPELAAHQKNLKSICQVTENPQLCHDTLNSVKPANSSDPTAYFAAAVAASAKSVIGALNMSDRLTIEHGDKNPGVHMALDDCKDLMEFALDSLEASANLVRDNHIQAIHDQIPDFRNWLSAVISYQQSCTEGFDSDTKGEDQVKELLKTESLDQMEKLTGMTLDIVTSMTHILQTFDLKMDLNPASRRLLDVNELDNEGLPTWFSISDRKLLSKTNNGGNPPPNVVVAKDGSGKFKTVKEAIDSYPKDFKERYIIYVKAGVYDEYITIPKKSINILMYGDGPTKTIVTGHKNFVDGVKTMQTATFANVANGFIAKSMAFENTAGPEKHQAVAFRNQGDMTAFFDCAMHGYQDTLYVQTNRQFYRNCEISGTVDFIFGASPTLIQNSKIVIRKPGPNQFNTVTADGTKQRSMATGIVLQNCEIVAESALQPVRFEFKSYLGRPWKEYSKTVVMESNIGDLIQPEGWSVWDGTQFLDTLYYAEYANTGPGADVSKRVNWKGYHPNINSNEAAQFTAGQFLRAGPTGKADDWLKATGIPYTIGFTKA 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00684 576 ProSitePatterns Pectinesterase signature 2. 400 409 IPR033131 -
Car04g00684 576 Gene3D - 252 573 IPR012334 -
Car04g00684 576 Pfam Pectinesterase 256 551 IPR000070 GO:0030599|GO:0042545
Car04g00684 576 SUPERFAMILY Pectin lyase-like 253 572 IPR011050 -
Car04g00684 576 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 202 IPR035513 -
Car04g00684 576 PANTHER PECTINESTERASE 3 574 - -
Car04g00684 576 TIGRFAM PME_inhib: pectinesterase inhibitor domain 18 200 IPR006501 GO:0004857
Car04g00684 576 CDD PMEI-like_3 45 202 - -
Car04g00684 576 Pfam Plant invertase/pectin methylesterase inhibitor 43 197 IPR006501 GO:0004857
Car04g00684 576 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 41 202 IPR035513 -
Car04g00684 576 PANTHER PECTINESTERASE 3 574 - -
Car04g00684 576 SMART PMEI_2 38 197 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00684 Car-Chr4 6727087 6729279 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00684 1 573 Carbohydrate Esterase AT2G47030 40.359 1.16e-138 413
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00684 K01051 - gmx:100775246 861.677