Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00680 ATGAATATGGAAAATGGTGTTGATGATGAAGCTACAGCGTCAGAGAAGAGTCCTATACCTATAGAAACAAGTGGAAACGGTgaaaaggacagagaaaaagaaaaggaaaaaacagaaaCAGTTCCTTTTCACAAATTATTCTCTTTTGCAGATTCTACTGACATTCTATTAATGGCTGCTGGAACTATCGGTGCTGTTGGAAACGGTTTGGGTTTACCTATCATGACTTTGCTGTTCGGTCAAATGATTGATAGTTTTGGTATTAATCAGAGCAACACCACCGATGTTGTGGAACAAGTGTCCAAGGTGTCACTGAAATTTGTATATTTGGCCGTAGGAAGTGGGGTGGCAGCCTTTCTCCAGGTGACATGTTGGATGGTTACAGGGGAAAGACAAGCAGCAAGAATAAGAGGATTGTATTTGAAAACAATACTAAGACAAGATGTTGCTTTCTTTGATAAAGAAACAAATACAGGAGAAGTTGTAGGTAGAATGTCAGGTGACACTGTTTTAATTCAAGATGCAATGGGAGAGAAGGTTGGGAAGTTTGTGCAGCTAACATCAACATTCATTGGAGGTTTTGTGATAGCATTTACTAAAGGGTGGCTTCTTACTGTTGTAATGATGTCTACTCTTCCACTTCTTGCTTTGGCAGGTGCTGCCATGGCTTTAATTATAGGCAGGATGGCTTCTAGAGGTCAAACTGCTTATGCAAAAGCTGCACATGTTGTTGAACAGACAATTGGCTCAATAAGAACCGTTGCATCTTATACTGGGGAAAAGCAAGCAGTATCTAGTTATAGCAAATATCTTGTAGATGCTTACCAATCAGGAGTTTTTGAAGGTTCTATAGCTGGAGTTGGCCTAGGCACGGTTATGTTTGTTGTTTTCTGTGGTTATGCTTTGGCTGTATGGTTTGGTGCAAAGATGATCATGGAAAAAGGATATAATGGAGGCACTGTGATTAATGTGATCATCGCCGTCTTAACCGCGTCCATGTCTCTTGGGCAGGCATCACCTAGTTTGAGTGCTTTTGCGGCGGGTCAGGCGGCGGCTTACAAAATGTTTGAGACTATTAAGAGGAGGCCAGAGATAGATTCTTACGACCCAAATGGAAAAACATTAGAGGATATTCAAGGTGAAATTGAGTTGAAGGATGTTTATTTCAGTTATCCTGCAAGACCTGAGGAACTGATATTCAATGGATTCTCTCTTCATATATCAAGTGGTACAACTGCAGCATTAGTTGGACAAAGTGGAAGTGGAAAGTCCACAGTTATCAGTTTAGTAGAAAGATTCTATGATCCACATGCAGGTGAAGTTCTTATTGATGGCATTAACCTGAAAGAATTTCAGCTCAGGTGGATCAGAGGGAAAATTGGTCTTGTCAGCCAAGAGCCAGTGTTGTTTGCTTCCAGCATTAAGGATAACATTGCATATGGAAAAGAAGGAGCAACTATTGAAGAGATAAAATCTGCATCTGAACTTGCAAATGCTGCCAAATTCATTGATAAACTTCCACAGGGATTGGACACAATGGTTGGTGACCACGGAACTCAGCTATCCGGTGGACAGAAGCAAAGAATCGCCATTGCAAGAGCAATCCTGAAGAATCCAAGAATTCTACTTCTAGACGAAGCTACAAGTGCACTTGATGCAGAATCTGAAAGGGTAGTGCAAGAGGCTCTAGATAGGATCATGGTCAACAGAACCACGGTCGTCGTAGCACATCGCTTGAGCACCGTGAGGAATGCTGACATGATTGCTGTAATCCATAGAGGGAAAATGGTTGAAAAAGGAACACACTCAGAATTACTCAAGGATCCTGAAGGAGCTTACTCTCAACTCGTGCGGTTACAAGAAGTAAACAGGGAATCAGAAGAAACTACAGATCATCACAACAGCAAGAGTGAACTTTCTGCAGAATCCTTTAGACAGTCTAGTCAAAGGAAGTCACTTCAAAGATCTATCAGTAGAGGATCATCTATAGGAAATAGTAGTCGACAATCGTTTTCAGTTTCGTTCGGTTTACCAACAGGAGTCAACGTTGCCGATCCTGAACCTGAAAATCTACCAACCAAAGAAGAAGTACAAGAAGTTCCACTAAGCCGCCTCGCTTCCCTCAACAAGCCAGAGATTCCAGTTCTTCTTATTGGATGTTTAGCTGCAATAGGAAATGGTGTTTTATTTCCAATATTCGGCATTCTGATTTCCAGTGTCATCAAAACATTTTACGAACCGTTTGATGAGTTGAAAAAAGACTCCAAATTTTGGGCAATAATGTTTTCGCTCCTTGGTCTTGCATCATTGGTGGTGATTCCAGCGCGGTCTTACTTTTTCTCTGTGGCTGGATGCAAGTTAATCCAACGTATCAGGCTAATATGTTTTGAGAAGGTGTTGAGCATGGAGGTTGGTTGGTTCGATGAGCCTGAGAACTCGAGCGGAGCAGTTGGTGCAAGGCTCTCGGCTGATGCTGCTTCTGTCCGCGCCCTTGTTGGTGATGCACTTGGACTGATGGTTCAGAATTTGGCAACTGCATTGGCTGGTTTAATTATCGCTTTCGTTGCAAGCTGGAAGCTGGCGTTTATTATTCTTGTCTTACTTCCTCTTATTGGATTAAATGGTTATGTTCAAATGAAATTCATGAAGGGATTCAGTGCAGATGCAAAAATGATGTATGAAGAGGCTAGCCAAGTTGCTAATGATGCAGTTGGAAGTATAAGAACTGTGGCTTCTTTCTGTGCTGAAGATAAGGTTATGGAACTATATGGGAAGAAATGTGAAGGTCCCATGAAAACAGGGATAAGGCAAGGGGTGATAAGTGGAGCAGGATTTGGTGTTTCATTTTTCTTATTGTTTTGTGTCTATGCAACAAGTTTTTATGCAGGATCTAGACTTGTGAAAGCTGGGGACACAACATTTTCAGATGTTTTCCGGGTTTTCTTTGCATTAACTATGTCAGCTATTGGTATTTCCCAATCAAGCTCATTTGCTCCTGACTCCAGCAAAGCAAAATCAGCTACTGCTTCCATATTTGGAATGATCGATAAGAAGTCAAAGATAGATCCAAGTGATGAGTCTGGTACAACTCTAGATAGTGTTAAGGGCGAAATTGAACTTCGTCATGTTAGTTTCAAGTATCCATCTAGGCCTGATATTCAAATTTTCAGAGACCTCAACTTAGCCATCCATTCTGGCAAGACAGTGGCACTTGTTGGTGAAAGTGGAAGTGGGAAATCAACTGTGATTGCCTTGTTGCAAAGATTTTATGATCCTGATTCAGGTGAAATAACACTTGATGGGATAGAAATTCGTGAGTTAAAGCTAAAGTGGTTAAGGCAGCAAATGGGTCTTGTAAGCCAAGAGCCAGTATTATTCAATGAGTCTATCCGTGCCAATATTGCCTATGGAAAAGGTGGCGATGCAACTGAAGCAGAAATCATAGCTTCATCTGAATTGGCCAATGCTCATAGGTTCATTAGTGGCTTACAACAGGGTTATGATACAATAGTGGGAGAGAGGGGTACCCAATTATCTGGTGGGCAGAAGCAAAGGGTAGCCATTGCACGTGCAATAATCAAAAGTCCAAAGATTTTGTTACTTGATGAGGCCACAAGTGCATTAGATGCTGAGTCAGAGAGAGTTGTTCAAGATGCATTAGATAAAGTAATGGTGAACAGAACCACTGTGGTTGTTGCACATAGATTATCTACAATTAAAAATGCAGATGTGATTGCTGTTGTGAAGAATGGAGTTATAGTGGAGAAAGGAAGGCATGAAACACTTATTAATGTTAAGGATGGATTTTATGCTTCCTTGGTCCAGCTTCATACAAGTGCTAAAACAGTATGA 3852 0.4086 MNMENGVDDEATASEKSPIPIETSGNGEKDREKEKEKTETVPFHKLFSFADSTDILLMAAGTIGAVGNGLGLPIMTLLFGQMIDSFGINQSNTTDVVEQVSKVSLKFVYLAVGSGVAAFLQVTCWMVTGERQAARIRGLYLKTILRQDVAFFDKETNTGEVVGRMSGDTVLIQDAMGEKVGKFVQLTSTFIGGFVIAFTKGWLLTVVMMSTLPLLALAGAAMALIIGRMASRGQTAYAKAAHVVEQTIGSIRTVASYTGEKQAVSSYSKYLVDAYQSGVFEGSIAGVGLGTVMFVVFCGYALAVWFGAKMIMEKGYNGGTVINVIIAVLTASMSLGQASPSLSAFAAGQAAAYKMFETIKRRPEIDSYDPNGKTLEDIQGEIELKDVYFSYPARPEELIFNGFSLHISSGTTAALVGQSGSGKSTVISLVERFYDPHAGEVLIDGINLKEFQLRWIRGKIGLVSQEPVLFASSIKDNIAYGKEGATIEEIKSASELANAAKFIDKLPQGLDTMVGDHGTQLSGGQKQRIAIARAILKNPRILLLDEATSALDAESERVVQEALDRIMVNRTTVVVAHRLSTVRNADMIAVIHRGKMVEKGTHSELLKDPEGAYSQLVRLQEVNRESEETTDHHNSKSELSAESFRQSSQRKSLQRSISRGSSIGNSSRQSFSVSFGLPTGVNVADPEPENLPTKEEVQEVPLSRLASLNKPEIPVLLIGCLAAIGNGVLFPIFGILISSVIKTFYEPFDELKKDSKFWAIMFSLLGLASLVVIPARSYFFSVAGCKLIQRIRLICFEKVLSMEVGWFDEPENSSGAVGARLSADAASVRALVGDALGLMVQNLATALAGLIIAFVASWKLAFIILVLLPLIGLNGYVQMKFMKGFSADAKMMYEEASQVANDAVGSIRTVASFCAEDKVMELYGKKCEGPMKTGIRQGVISGAGFGVSFFLLFCVYATSFYAGSRLVKAGDTTFSDVFRVFFALTMSAIGISQSSSFAPDSSKAKSATASIFGMIDKKSKIDPSDESGTTLDSVKGEIELRHVSFKYPSRPDIQIFRDLNLAIHSGKTVALVGESGSGKSTVIALLQRFYDPDSGEITLDGIEIRELKLKWLRQQMGLVSQEPVLFNESIRANIAYGKGGDATEAEIIASSELANAHRFISGLQQGYDTIVGERGTQLSGGQKQRVAIARAIIKSPKILLLDEATSALDAESERVVQDALDKVMVNRTTVVVAHRLSTIKNADVIAVVKNGVIVEKGRHETLINVKDGFYASLVQLHTSAKTV 1283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00680 1283 ProSitePatterns ABC transporters family signature. 521 535 IPR017871 GO:0005524
Car04g00680 1283 Gene3D - 1028 1282 IPR027417 -
Car04g00680 1283 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 14 1279 - -
Car04g00680 1283 PANTHER - 14 1279 - -
Car04g00680 1283 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 717 1003 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car04g00680 1283 CDD ABC_MTABC3_MDL1_MDL2 382 620 - -
Car04g00680 1283 Gene3D - 380 638 IPR027417 -
Car04g00680 1283 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1038 1275 IPR003439 GO:0005524
Car04g00680 1283 MobiDBLite consensus disorder prediction 640 670 - -
Car04g00680 1283 MobiDBLite consensus disorder prediction 623 670 - -
Car04g00680 1283 CDD ABC_MTABC3_MDL1_MDL2 1038 1276 - -
Car04g00680 1283 SUPERFAMILY ABC transporter transmembrane region 45 366 IPR036640 GO:0005524|GO:0016021
Car04g00680 1283 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 59 347 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car04g00680 1283 MobiDBLite consensus disorder prediction 623 639 - -
Car04g00680 1283 MobiDBLite consensus disorder prediction 25 39 - -
Car04g00680 1283 Gene3D ABC transporter type 1, transmembrane domain 105 1012 IPR036640 GO:0005524|GO:0016021
Car04g00680 1283 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1028 1276 IPR027417 -
Car04g00680 1283 CDD ABC_6TM_Pgp_ABCB1_D2_like 706 1021 - -
Car04g00680 1283 Pfam ABC transporter transmembrane region 60 333 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car04g00680 1283 Pfam ABC transporter transmembrane region 716 988 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car04g00680 1283 SMART AAA_5 1065 1258 IPR003593 -
Car04g00680 1283 SMART AAA_5 409 595 IPR003593 -
Car04g00680 1283 ProSitePatterns ABC transporters family signature. 1178 1192 IPR017871 GO:0005524
Car04g00680 1283 SUPERFAMILY ABC transporter transmembrane region 704 1022 IPR036640 GO:0005524|GO:0016021
Car04g00680 1283 Pfam ABC transporter 401 549 IPR003439 GO:0005524
Car04g00680 1283 Pfam ABC transporter 1057 1206 IPR003439 GO:0005524
Car04g00680 1283 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 371 620 IPR027417 -
Car04g00680 1283 MobiDBLite consensus disorder prediction 1 39 - -
Car04g00680 1283 CDD ABC_6TM_Pgp_ABCB1_D1_like 58 343 - -
Car04g00680 1283 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 382 618 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00680 Car-Chr4 6688495 6695199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00680 32 1282 Calmodulin-binding Proteins AT2G36910 44.716 0.0 1077
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00680 K05658 - gmx:100777909 2149.01