Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00676 ATGGGTAAAACCTCTACTTCTTCTTCCTCTTCCACCAACAGTAGAAGGAAAAATGTTTCCTCAAATGTTTCTTCCTCTATCACACACCAAAATACTACTACTCCACATCTTTCTCCTGATCTTAGACTTGGTTTGAGCATTTCCACAACTCAACAATATTTTGGCACTTCCACTTCAAGGGGACAGTGGCATCAACAAGGTGCTGAAGTAAATGATTGTAACGATTACAATAGCTTCTTTGTGAAGGTTTACATGGAAGGCATTCCAATTGGGAGAAAACTCAATTTATTAGCTCATGGTGGTTATCAAGAGTTAGTAAATACCCTTGAGCAAATGTTCGACACTACCATTCTATGGGGGACTGATATGGATGGAATGCAATCAGAGAGATGTCATGTGCTAACATATGAAGATGGAGAAGGAGATTTGATTATGGTTGGAGATGTCCCTTGGGAGATGTTCTTATCATCTGTGAAGAGGTTGAAGATCACAAGGGTAGATGCATTTGGGTGTTAA 516 0.3953 MGKTSTSSSSSTNSRRKNVSSNVSSSITHQNTTTPHLSPDLRLGLSISTTQQYFGTSTSRGQWHQQGAEVNDCNDYNSFFVKVYMEGIPIGRKLNLLAHGGYQELVNTLEQMFDTTILWGTDMDGMQSERCHVLTYEDGEGDLIMVGDVPWEMFLSSVKRLKITRVDAFGC 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00676 171 MobiDBLite consensus disorder prediction 1 41 - -
Car04g00676 171 Pfam AUX/IAA family 65 165 IPR033389 -
Car04g00676 171 PANTHER AUXIN-INDUCED PROTEIN 2 170 - -
Car04g00676 171 ProSiteProfiles PB1 domain profile. 78 168 IPR000270 GO:0005515
Car04g00676 171 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 170 IPR003311 GO:0005634|GO:0006355
Car04g00676 171 SUPERFAMILY CAD & PB1 domains 74 163 - -
Car04g00676 171 Gene3D - 72 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00676 Car-Chr4 6659271 6660421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00676 82 163 B3 DNA Binding Superfamily AT4G23980 37.805 1.34e-13 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Car04g00676 AUX_IAA 6e-29 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00676 K14484 - gmx:100781660 227.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02859 03 73931087 73932084 Car04g00676 04 6659271 6660421 PCT