Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00671 ATGGGAAGACACTCATGTTGTTACAAGCAGAAGCTTAGGAAGGGTCTTTGGTCACCAGAGGAAGATGAAAAACTACTAAGGCATATAACAAAGTATGGACATGGATGTTGGAGTTCTGTTCCTAAACAAGCTGGTTTGCAAAGGTGTGGTAAGAGTTGCAGACTTAGGTGGATTAATTACTTAAGGCCTGATTTAAAAAGAGGAACATTTTCACAAGATGAAGAAAATCTCATTATTGAACTTCATGCAGTACTAGGGAATAGATGGTCTCAAATTGCGGCGCAATTGCCGGGGAGAACAGACAATGAAATAAAGAATCTATGGAACTCTTGTTTGAAGAAGAAACTGAGGCAAAAAGGTATAGACCCTGTGACTCATAAGCCACTATCTGAAGTTGAGAATTTAGAGGACAATGTGAAGAGTCAAGAGAAAGTAGCACAAGTATCCAATGAATTGAATCTTTTGAAATCAGAGAGTTCAAAATCAGATGCAGCTTCTTGTGATCACAGAACATCAACTTCATTATCACCAAAAGCATATGCACAAGAGATGGATGGTTCAGGTTCTTACACCAAAAGTGAAAGTAGTAATTTGATGAACAGCAAAGACATGTTCCTAGACAAGTTCATGAATCATCAAACTGATTTAATGGCAAATTTCCCACTTCAGATGAGTTTTTCAAACACTGAAAATGATTGTTTAACTAATGATTCAAACTCTAGTCATTGGTTTAACCAAACAGGAAAAACTTTTGATATGAATTCTGAGTTTCCTTTCAATTCAAATTCTATTCTTACACCTACAACAACTACATCTACTACTACCATGTTTCTTCCTAATTCTTTTTGCTGCAATGATTCATCACTTGCTACTATTCACTCTGACAATGTTTCTACACCATGTGGATCCAATTATTGGGAAGTTAATAGAAGTGATAATAGAAGCAATAATAGCAGCACCTTGAATTTGCAAAACAACATTTTTTCTTCTTGGGGATTGGCAGATTGTAGTATAAATTCTACTAAAGAAGCTCAAATTCATGATATGATTGAGCATAATCATGCAGAAGAAGAAGCTAAATGGGAAAATAACTATCTTCACAATCCAATTTTAATGTTGGCTTCTGAATCTTTATGTAATGAGATAAAGCCTTCCATGATGCAATTGGTACCTCATGATACTTTAGGGGCTATTTTACCTCATACAAAGCAGCAAGAACAGTCACAAGCTTCTAATATCTTTTCTAAGGACATTCAGAAGCTTAGAGCAGCCTTTGGTGATATGTAA 1287 0.3559 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQDEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQKGIDPVTHKPLSEVENLEDNVKSQEKVAQVSNELNLLKSESSKSDAASCDHRTSTSLSPKAYAQEMDGSGSYTKSESSNLMNSKDMFLDKFMNHQTDLMANFPLQMSFSNTENDCLTNDSNSSHWFNQTGKTFDMNSEFPFNSNSILTPTTTTSTTTMFLPNSFCCNDSSLATIHSDNVSTPCGSNYWEVNRSDNRSNNSSTLNLQNNIFSSWGLADCSINSTKEAQIHDMIEHNHAEEEAKWENNYLHNPILMLASESLCNEIKPSMMQLVPHDTLGAILPHTKQQEQSQASNIFSKDIQKLRAAFGDM 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00671 428 PANTHER MYB DOMAIN PROTEIN 55 1 422 - -
Car04g00671 428 MobiDBLite consensus disorder prediction 157 196 - -
Car04g00671 428 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Car04g00671 428 SMART sant 66 114 IPR001005 -
Car04g00671 428 SMART sant 13 63 IPR001005 -
Car04g00671 428 Coils Coil 132 158 - -
Car04g00671 428 CDD SANT 17 61 IPR001005 -
Car04g00671 428 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Car04g00671 428 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Car04g00671 428 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Car04g00671 428 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Car04g00671 428 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Car04g00671 428 Gene3D - 69 148 - -
Car04g00671 428 CDD SANT 69 109 IPR001005 -
Car04g00671 428 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Car04g00671 428 Gene3D - 11 67 - -
Car04g00671 428 PANTHER HOMEODOMAIN-RELATED 1 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00671 Car-Chr4 6604384 6606384 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00671 1 147 MYB Transcription Factor Family AT4G01680 88.514 7.20e-94 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car04g00671 Myb_DNA-binding 2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00671 K09422 - gmx:100815881 571.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02862 03 73953546 73955317 Car04g00671 04 6604384 6606384 PCT