Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00662 ATGAAAGTTCTGATTTATAAAAACCCACAAGAGTCTATCATCATCTTAAGCACAAAATTAAGAAATTTTGAGATCAAGGAGATGGAAAGGCTTATGATTTTGAGTGGTGTAGTAATGCTTGTGGGGTTGTTTACCTCACAATTAAGAGTAGCATCAGCAAAGTGGGAGAAAGCTCATGCAACTTTTTATGGTGGAAGTGATGCCTCAGGAACTATGGGGGGTGCATGTGGGTATGGAGATCTGTACACAGATGGTTATGGAATAAAAACAACTGCTTTGAGTACTGCTTTGTTCAAGGATGGAAAGTCATGTGGTGGTTGCTATCAGATTGTTTGTGATGCAAGTCAAGTGCCACAGTGGTGTCTTAGGGGAACTTCCATAACAGTTACTGCCACAAATTTCTGTCCCCCAAACTTTGATCTTCCTAGTGACAATGGTGGTTGGTGTAATCCTCCTAGACCACATTTTGACATGTCTCAACCCGCTTTTGAGATGATCGCCAAATATAAAGCTGGGATTGTTCCAATCTTTTACAGAAAAGTTGGTTGCAAAAGAAGTGGAGGAATCAGATTTACAATCAATGGGAAAGACTATTTTGAACTAGTGCTTATAAGCAACATAGGGGGACCAGGGGATATCTCAAAAGTTTGGATCAAAGGGTCAAAAATGAAGAAATGGGAAACTATGTCAAGGAATTGGGGTGTTAACTGGCAAAGCTTAAGTTATCTAAATGGTCAAAGCTTGTCATTCAGAGTCCAACTCAGTAATGGAAAGACCCACACAGCTATTAATGTGGCACCGTCTGGTTGGAGTTTTGGCCAGTCTTTTATCAGCAAGATTCAGTTCTGA 849 0.4028 MKVLIYKNPQESIIILSTKLRNFEIKEMERLMILSGVVMLVGLFTSQLRVASAKWEKAHATFYGGSDASGTMGGACGYGDLYTDGYGIKTTALSTALFKDGKSCGGCYQIVCDASQVPQWCLRGTSITVTATNFCPPNFDLPSDNGGWCNPPRPHFDMSQPAFEMIAKYKAGIVPIFYRKVGCKRSGGIRFTINGKDYFELVLISNIGGPGDISKVWIKGSKMKKWETMSRNWGVNWQSLSYLNGQSLSFRVQLSNGKTHTAINVAPSGWSFGQSFISKIQF 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00662 282 PRINTS Expansin/Lol pI family signature 54 69 IPR007118 GO:0005576
Car04g00662 282 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576
Car04g00662 282 PRINTS Expansin/Lol pI family signature 94 112 IPR007118 GO:0005576
Car04g00662 282 PRINTS Expansin/Lol pI family signature 171 187 IPR007118 GO:0005576
Car04g00662 282 PRINTS Expansin/Lol pI family signature 226 240 IPR007118 GO:0005576
Car04g00662 282 PRINTS Expansin/Lol pI family signature 264 278 IPR007118 GO:0005576
Car04g00662 282 SUPERFAMILY Barwin-like endoglucanases 47 206 IPR036908 -
Car04g00662 282 PANTHER EXPANSIN 34 282 - -
Car04g00662 282 PRINTS Expansin signature 85 99 IPR002963 GO:0009664
Car04g00662 282 PRINTS Expansin signature 114 125 IPR002963 GO:0009664
Car04g00662 282 PRINTS Expansin signature 127 137 IPR002963 GO:0009664
Car04g00662 282 PRINTS Expansin signature 146 163 IPR002963 GO:0009664
Car04g00662 282 PRINTS Expansin signature 163 176 IPR002963 GO:0009664
Car04g00662 282 PRINTS Expansin signature 187 199 IPR002963 GO:0009664
Car04g00662 282 PRINTS Expansin signature 199 220 IPR002963 GO:0009664
Car04g00662 282 PRINTS Expansin signature 235 256 IPR002963 GO:0009664
Car04g00662 282 PRINTS Expansin signature 264 280 IPR002963 GO:0009664
Car04g00662 282 PANTHER EXPANSIN-A15 34 282 IPR002963 GO:0009664
Car04g00662 282 SMART dpbb_1 90 178 IPR007112 -
Car04g00662 282 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 73 188 IPR007112 -
Car04g00662 282 Pfam Expansin C-terminal domain 189 267 IPR007117 -
Car04g00662 282 SUPERFAMILY PHL pollen allergen 185 278 IPR036749 -
Car04g00662 282 Gene3D - 188 282 IPR036749 -
Car04g00662 282 Gene3D - 42 184 IPR036908 -
Car04g00662 282 Pfam Lytic transglycolase 90 178 IPR009009 -
Car04g00662 282 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 198 278 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00662 Car-Chr4 6550697 6553319 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00662 28 282 Expansin Gene Family AT4G01630 71.765 1.49e-141 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00662 - - gmx:100813434 468.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02866 03 73989205 73991741 Car04g00662 04 6550697 6553319 PCT