Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00657 ATGACTTCCATTCCCGGTGCAGTTGGAAGTACTTGTTCCTCTCTTCAACTTCTTAAGACACCAACTTCCTCAACACCCTCCTCCTTTTCATTCTTCAACAATACCTCCCGTTTCACCACCCTTCTTCGACTCCGTTCCAACCACAAAACCCCCACCCTTTCTTTCGTTACTTCTGCTATTGCCACCCCCAATTCCTCTATCCTCACCTCTCAAGAAGCTTTCGAGGGTTTTACTTTCCAAGACTCTAACGACCAACTCACCATCAGCAAAGACGAACTCGACATTTCCAAGCTCCGTTTTCCTTCCCAACTTGTTCACTCGCTCCACAACCGTGGAATCACCAATCTTTTCCCCATTCAGAGAGCTGTGCTGCTTCCTGCAATAGAAGGTAGAGATATCATTGCTCGTGCAAAGACCGGGACTGGCAAGACGTTAGCCTTTGGAATTCCAATTCTCAAGGGTCTCACCGAGGATCAACAGACCAATCTCAGGCGGTCTGGTAGGCTTCCTAAAGTACTGGTCCTTGCACCTACTAGGGAGTTAGCAAAGCAAGTAGAGAAGGAGATAAAAGAATCTGCACCTTATCTAAACACAATTTGTGTTTATGGCGGTGTTTCTTATGATATTCAGAAGAATGCACTTTCCCGTGGTGTTGATGTAGTGGTGGGAACACCCGGGAGAATAATTGACCTAGTGAATGGAAACAGCCTTAAACTGAGTCAAATTCAGTATTTTGTCCTTGATGAAGCCGATCAGATGCTTGCTGTTGGGTTTGAGGAGGATGTAGAAGTGATTTTAGAAAGGATCCCGACTCAGCGCCAGATCATGCTTTTCTCTGCAACCATGCCGGGTTGGGTCAAGAAATTGTCAAGAAAACATTTGAACAACCCATTGACTATTGATTTGGTCGGGGATAAAGAAGAAAAACTCGCTGATAGGATCAAACTTTATGCTGTATCAGCCACTGCAACATCAAAGAGGAGAATTCTTTTCGGTCTAATAAGTGTCTATGCAAAGGGTGGAAAGACTATTGTTTTCACACGAACAAAAAGGGATGCTGATGAAATATCATTGTCATTAACAAGTAGTATAGCTTCTAAAGCACTACATGGTGATATCTCTCAGTATCAGAGAGAGAGAACATTGAATGGTTTTCGGGAAGGGAGATTCACAGTGCTTGTTGCTACTGATGTTGCTGCTCGTGGACTAGATATTCCCAATGTTGATTTGATTATACATTATGAACTTCCTGACGGTCCCGAGACTTTTGTTCATCGCTCTGGTCGTACTGGACGTGCAGGAAAAGAGGGTACGGCTATTGTGATGTACACCATTAGCCAGAAAAGAACTGTTATATCCCTTGAGCGTGATGTAGGCTCCAAATTTGAATTTATTAGTCCACCACCTATGCAAGAGATTTCAGAATCATCTACCAAGCAAGTTGTTGCAACACTTGATAGAGATGGAAGTAATTGGagaagttctagggatcagagaggttctatagatcggagaggttctagggatccgagaggttctacagatcggagaggttctagggatcagagAGGTTCTAGGGATGACTGGCTAACTGGAGATAGTCGATCAAGCAGGTATTCATCATCAAACAGAAGTAGTTATGGAGGGGCCTGTTTTAATTGTGGACAACCGGGGCATCGAGCATCAGAATGTACCAATAAACGAGACTTTTTTTAG 1716 0.412 MTSIPGAVGSTCSSLQLLKTPTSSTPSSFSFFNNTSRFTTLLRLRSNHKTPTLSFVTSAIATPNSSILTSQEAFEGFTFQDSNDQLTISKDELDISKLRFPSQLVHSLHNRGITNLFPIQRAVLLPAIEGRDIIARAKTGTGKTLAFGIPILKGLTEDQQTNLRRSGRLPKVLVLAPTRELAKQVEKEIKESAPYLNTICVYGGVSYDIQKNALSRGVDVVVGTPGRIIDLVNGNSLKLSQIQYFVLDEADQMLAVGFEEDVEVILERIPTQRQIMLFSATMPGWVKKLSRKHLNNPLTIDLVGDKEEKLADRIKLYAVSATATSKRRILFGLISVYAKGGKTIVFTRTKRDADEISLSLTSSIASKALHGDISQYQRERTLNGFREGRFTVLVATDVAARGLDIPNVDLIIHYELPDGPETFVHRSGRTGRAGKEGTAIVMYTISQKRTVISLERDVGSKFEFISPPPMQEISESSTKQVVATLDRDGSNWRSSRDQRGSIDRRGSRDPRGSTDRRGSRDQRGSRDDWLTGDSRSSRYSSSNRSSYGGACFNCGQPGHRASECTNKRDFF 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00657 571 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 41 487 - -
Car04g00657 571 MobiDBLite consensus disorder prediction 490 533 - -
Car04g00657 571 CDD SF2_C_DEAD 314 443 - -
Car04g00657 571 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 332 474 IPR001650 -
Car04g00657 571 MobiDBLite consensus disorder prediction 534 550 - -
Car04g00657 571 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 124 300 IPR014001 -
Car04g00657 571 Pfam Helicase conserved C-terminal domain 328 434 IPR001650 -
Car04g00657 571 SMART c2hcfinal6 550 566 IPR001878 GO:0003676|GO:0008270
Car04g00657 571 MobiDBLite consensus disorder prediction 470 489 - -
Car04g00657 571 SUPERFAMILY Retrovirus zinc finger-like domains 531 569 IPR036875 GO:0003676|GO:0008270
Car04g00657 571 ProSiteProfiles Zinc finger CCHC-type profile. 551 566 IPR001878 GO:0003676|GO:0008270
Car04g00657 571 MobiDBLite consensus disorder prediction 465 550 - -
Car04g00657 571 CDD DEADc 104 301 - -
Car04g00657 571 SMART ultradead3 112 317 IPR014001 -
Car04g00657 571 SMART helicmild6 354 434 IPR001650 -
Car04g00657 571 Gene3D - 94 304 IPR027417 -
Car04g00657 571 Pfam Zinc knuckle 550 566 IPR001878 GO:0003676|GO:0008270
Car04g00657 571 Pfam DEAD/DEAH box helicase 117 289 IPR011545 GO:0003676|GO:0005524
Car04g00657 571 Gene3D - 527 569 - -
Car04g00657 571 Gene3D - 314 499 IPR027417 -
Car04g00657 571 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 3, CHLOROPLASTIC ISOFORM X1 41 487 - -
Car04g00657 571 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 455 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00657 Car-Chr4 6507355 6512396 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00657 78 456 Eukaryotic Initiation Factors Gene Family AT1G72730 35.509 6.72e-63 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00657 - - vra:106757668 671.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02873 03 74058349 74063489 Car04g00657 04 6507355 6512396 PCT