Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00645 ATGGGAAGACACTCTTGTTGCTACAAGCAGAAGTTAAGGAAAGGACTTTGGTCTCCAGAGGAAGATGAGAAGCTTTTGAATTACATCACCAAACATGGTCATGGATGTTGGAGTTCAGTTCCCAAACTAGCTGgtttgcagaggtgtggaaagagctgcaggttaaggtggataaattacttgaggcctgatttgaaaagaggagcattctcacaacaagaagagaatttgattattgaactcCATGCAGTCCTTGGAAACAGATGGTCTCAGATTGCAGCACAGTTACCAGGAAGAACTGATAATGAGATTAAAAATCTTTGGAATTCATGTCTCAAAAAGAAGCTAAGACAAAAAGGCATTGACCCAAACACACACAAACCACTCTGTGAAGTTGAAAATGACAAGGAAAAGCCACTCATAACAAACAAAACCAATCAAAAAGCCTCAGTTTCATCCAATGAAGTTATGAATTTGGTAATTGAGCCTTCAAAACCAAAACCAACTACTGCTTCCATTTCTATAGAAGGATACCCTCTTGAAGTTTCTACAAGTTCCATCAACAGGTCATCTGATATGTCAGGTTATTTTTCTTTCCAACACTTGAACTATGAACCAAACATGGTGATTTCTGAAAACATTCCAAATGCTTCTATTTGTTTCACACCAACCTCAAATTCTTCACAAATTATGTCAGATACTAATAACTCTGGTATAACTTCAACTATGCTTCATTCTGTTTCAACCTCAATTTTCCAAACACCAACAAATGTAAAGCCAACTGTTTCAATATCTTCTGATGGAGTTCAAAACTGGGAAGCAAGTAACAACAACTTCAGTAGTAACATTAACAACACAAACAACAGCACTTTACCTTTACAAGAAGAAATGAAATGGTGTGAATATCTTAACACACCATTTCTTATGCAGAATCAACAACCCTCTCAACCTCAATCTATCTACAATGAGGTTAAACCAGAAACAGGTTTCATAACAGATGAGTCATGTGGTACTAGTTGGCACCATCAGCAAAATCAGCAGCAACCACAACAAGCTTTTCAACTTTCTGATATATATAGCAAGGATCTTCTGCAGAGATTTTCAGTGGCTTTTGGACAAACCCTTTAG 1128 0.3351 MGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQKGIDPNTHKPLCEVENDKEKPLITNKTNQKASVSSNEVMNLVIEPSKPKPTTASISIEGYPLEVSTSSINRSSDMSGYFSFQHLNYEPNMVISENIPNASICFTPTSNSSQIMSDTNNSGITSTMLHSVSTSIFQTPTNVKPTVSISSDGVQNWEASNNNFSSNINNTNNSTLPLQEEMKWCEYLNTPFLMQNQQPSQPQSIYNEVKPETGFITDESCGTSWHHQQNQQQPQQAFQLSDIYSKDLLQRFSVAFGQTL 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00645 375 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Car04g00645 375 PANTHER MYB DOMAIN PROTEIN 55 1 288 - -
Car04g00645 375 PANTHER MYB DOMAIN PROTEIN 55 294 367 - -
Car04g00645 375 PANTHER HOMEODOMAIN-RELATED 294 367 - -
Car04g00645 375 PANTHER HOMEODOMAIN-RELATED 1 288 - -
Car04g00645 375 CDD SANT 17 61 IPR001005 -
Car04g00645 375 Gene3D - 11 67 - -
Car04g00645 375 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Car04g00645 375 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Car04g00645 375 SMART sant 66 114 IPR001005 -
Car04g00645 375 SMART sant 13 63 IPR001005 -
Car04g00645 375 CDD SANT 69 109 IPR001005 -
Car04g00645 375 Gene3D - 68 150 - -
Car04g00645 375 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Car04g00645 375 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Car04g00645 375 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Car04g00645 375 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00645 Car-Chr4 6383229 6385315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00645 1 375 MYB Transcription Factor Family AT1G09540 48.293 7.27e-112 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car04g00645 Myb_DNA-binding 2.4e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g00645 04 6383229 6385315 Car03g02880 03 74122519 74124114 ECH
Car04g00645 04 6383229 6385315 Car04g00645 04 6383229 6385315 ECH
Car03g02880 03 74122519 74124114 Car04g00645 04 6383229 6385315 PCT