Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00643 ATGCCTCTTTATGAGTTATACCGGTTGGCTAGAGAGAACCTTGGTAATGAGACTAACAATACAAGTGTAGCTGATCAACCTTCTGAGTCTGAAAATGATTTTTTTGAGCTGGTTTGGGAGAGTGGTCAGATTTCAAGCCAAGGTCAATCAAGTAGAGTTAGAAAGAGTCCATCTTGCAGGAGTTTTCCATCTCACTGCCTACCATCTCATAGTCCTCGAGGTCGAGATAAAGACATAGGAGTAGGAGGATATGGTAACAATCCAAGGACTGGAAAGTTTGGGGATTTAGAAACTGGATTGAATGAGATTCCAATGTCAGTGCCATCACATGTAGTAGATGTTGGTCAGGATGAAGACATGATGCCTTGGTTGGATTATTCAATGGATGGCTCTTTTCAAAACGAATATGGTTCTAATTTCTTACATGAACTACCTTCAGTCGCGGGGAATAACCTTCCTGCTGCCTCGAATAATTTTACTCTATTGGATAAAAGGAGTAATGGAAATCAGATATTTAGGAAGTCTCATAAAAATTCTGCAGAACCAATGAATGTTTCTAGGGGTTCTTCAGCTGAACCGGTTGAGACTGCAAGACTTAATAAAGCTAGCACTAGTCAGTTATACCCTCCATCAACGTCATTTTTAACTGTTAGATCCAGGGCATCGGATGTAGCTGAAAATAATAATGCAAGTAATGCTAACCAGGATGTGCCTTATGGTGAAATTACTCGCATTACATCTTCCTCGAGCGATTTTCCTAGCTTAAAGGTGCAGAAGCAAGATCCTAAAATGCCTGGAAATAGTTCCAGTTTGATGAATTTTTCTCATTTTGCAAGGCCTGCTGCTATCGTGAGAGCTAATCTTCAGAACATTAGCTTGAAGTCTGGTTTGGTTTCAGCTTCAGCAAGATCAGATAGTATCGCAGTCAAGAATAAAGGCGCTGCTTCGACTAGCAGCAATCCTCCTGACTCGACTCTTGTTAATTCCAGCGGTGACTGTTCAAAGGAACCAGAAACACGCTGTCAGAAGGTGGCGGAGCAACCCAAGGTTGATTTGAAACCTTTGCAGCCAAAATCTCTTGAACTGAAAGTTGTAGCTTCTAAACAATCGGAGCCTGCTTGCAAAGAAAGTGGAGTTAAGAATGATCAACCTTCCAATCAAGTTCTTGGCGACGGTGTTGCTAAAGGACAAACAACTGTTGAAAAAGGTGTGGAGGTGGCAGTAGCCTCTTCTTCTGTTTGCTCTGGCAATGGTGCAGACAGAGGCTCGGATGATCCAAATCAAAATTTGAAACGGAAAAGTAGAGACACGGAGGACTCTGAATGCCATAGTGAAGATGTTGAGGATGAATCGGTGGTTGTCAAAAAGGGAGCTTCTGGACGAGGAGTTATTGGTTCCAAAAGAAGCCGTGCTGCTGAAGTGCATAATCTATCTGAAAGGAGGCGAAGAGACAGGATAAACGAGAAGATGCGTGCATTACAAGAACTCATACCTAATTGCAATAAGGTGGATAAAGCTTCTATGCTAGACGAAGCAATTGAGTATCTAAAAACACTTCAGCTCCAAGTTCAAATGATGTCAATGGGAGCCGGTTTATATATGCCTCCAATGATGTTACCTGCTGGAATGCAGCACATGCATGCACCACACATGGCTGCATTTTCACCTTTGGGTGTCGGCATGCATATGGGGTTAGGTATGGGATATGGGATGGGAATCCCTGACATGAACGGTGGATCTTCAAGATTTCCAATGATTCAAGTGCCACAGATGCAAGGAGCTCATATCCCTGTTGCACATATGTCTGGACCCTCGGCTATACATGGGATGGCAAGATCAAATCCTCAAGGATTTGGGCTTCAAGGTCAGGGAATTTCTATGCCAATGCCGCGAGCTCCTGTATTTCCTTTTTCAGGAGGACCTATTATGAACTCATCAGCTACGGGAACATCTGCTTATGGATCCGCAGGACCTGTTGAAACTGTGAATCCGGCTTCAGCATCTGGCTCAAAAGATCCTACGCCAAATGTGGACTCGCAAATTAAGCAAAGCACCAGTGGCCGTGACACTACAAGCCAGATCCCTAACCAGCGTGAACCAACAACTGCTGTATTTAAACAGCCAGCTTCGGTGCATAATGGTGGTAATGTCTCAGTTGCTGATGACAGTGGAACTGCTAATCCTGGCAATATCACTTTGTGA 2202 0.436 MPLYELYRLARENLGNETNNTSVADQPSESENDFFELVWESGQISSQGQSSRVRKSPSCRSFPSHCLPSHSPRGRDKDIGVGGYGNNPRTGKFGDLETGLNEIPMSVPSHVVDVGQDEDMMPWLDYSMDGSFQNEYGSNFLHELPSVAGNNLPAASNNFTLLDKRSNGNQIFRKSHKNSAEPMNVSRGSSAEPVETARLNKASTSQLYPPSTSFLTVRSRASDVAENNNASNANQDVPYGEITRITSSSSDFPSLKVQKQDPKMPGNSSSLMNFSHFARPAAIVRANLQNISLKSGLVSASARSDSIAVKNKGAASTSSNPPDSTLVNSSGDCSKEPETRCQKVAEQPKVDLKPLQPKSLELKVVASKQSEPACKESGVKNDQPSNQVLGDGVAKGQTTVEKGVEVAVASSSVCSGNGADRGSDDPNQNLKRKSRDTEDSECHSEDVEDESVVVKKGASGRGVIGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQMMSMGAGLYMPPMMLPAGMQHMHAPHMAAFSPLGVGMHMGLGMGYGMGIPDMNGGSSRFPMIQVPQMQGAHIPVAHMSGPSAIHGMARSNPQGFGLQGQGISMPMPRAPVFPFSGGPIMNSSATGTSAYGSAGPVETVNPASASGSKDPTPNVDSQIKQSTSGRDTTSQIPNQREPTTAVFKQPASVHNGGNVSVADDSGTANPGNITL 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00643 733 MobiDBLite consensus disorder prediction 370 391 - -
Car04g00643 733 PANTHER TRANSCRIPTION FACTOR PIF3 1 693 - -
Car04g00643 733 MobiDBLite consensus disorder prediction 250 269 - -
Car04g00643 733 MobiDBLite consensus disorder prediction 425 455 - -
Car04g00643 733 PANTHER TRANSCRIPTION FACTOR PIF3 1 693 IPR044273 GO:0003700|GO:0006355
Car04g00643 733 CDD bHLH_AtPIF_like 470 532 - -
Car04g00643 733 MobiDBLite consensus disorder prediction 311 335 - -
Car04g00643 733 MobiDBLite consensus disorder prediction 648 733 - -
Car04g00643 733 MobiDBLite consensus disorder prediction 411 483 - -
Car04g00643 733 MobiDBLite consensus disorder prediction 311 337 - -
Car04g00643 733 MobiDBLite consensus disorder prediction 46 89 - -
Car04g00643 733 MobiDBLite consensus disorder prediction 374 391 - -
Car04g00643 733 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 470 519 IPR011598 GO:0046983
Car04g00643 733 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 467 530 IPR036638 GO:0046983
Car04g00643 733 SMART finulus 476 525 IPR011598 GO:0046983
Car04g00643 733 Gene3D - 465 528 IPR036638 GO:0046983
Car04g00643 733 Pfam Helix-loop-helix DNA-binding domain 474 520 IPR011598 GO:0046983
Car04g00643 733 MobiDBLite consensus disorder prediction 46 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00643 Car-Chr4 6344426 6349591 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00643 1 599 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 35.679 2.36e-77 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car04g00643 HLH 8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00643 K12126 - gmx:100794974 958.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g00643 04 6344426 6349591 Car04g00643 04 6344426 6349591 ECH