Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00624 ATGCCAATAAGAAAGTATTTCTGTGAATATTGCGAAAAGCAATTTCAAGACACACCTTCCGATCGGAAACGCCACAATGCAGGCATTCAGCATCAACAAGCCAAAGCTCGATGGTATGATTCTTTCAAGCCTCAACAACAACAAAACCCTACTCCACGATCTAATCAACCCTTCTGCCTTCACTTCGTCAACAAGGGATTTTGTCGTTTTGGTGATTCTTGCAAATACTTTCATCCCAATACACAGCAGCTGCAGCAGCCAGGGAATGTAGCAGGAGACAGTATGAGAACACGGATGGGAGTGTCGTTGGACAATTTACCTCCTTCGCTGCAGCCTCCACCTGAAGGTGGATACCCCGAACTCCCCTTTGTCGACTGGGGTTAG 384 0.4661 MPIRKYFCEYCEKQFQDTPSDRKRHNAGIQHQQAKARWYDSFKPQQQQNPTPRSNQPFCLHFVNKGFCRFGDSCKYFHPNTQQLQQPGNVAGDSMRTRMGVSLDNLPPSLQPPPEGGYPELPFVDWG 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00624 127 SUPERFAMILY beta-beta-alpha zinc fingers 4 57 IPR036236 -
Car04g00624 127 MobiDBLite consensus disorder prediction 18 55 - -
Car04g00624 127 Pfam U1 zinc finger 4 39 IPR013085 GO:0008270
Car04g00624 127 ProSiteProfiles Zinc finger C3H1-type profile. 53 81 IPR000571 GO:0046872
Car04g00624 127 SUPERFAMILY CCCH zinc finger 55 81 IPR036855 GO:0046872
Car04g00624 127 SMART c3hfinal6 53 80 IPR000571 GO:0046872
Car04g00624 127 Gene3D Classic Zinc Finger 3 53 - -
Car04g00624 127 MobiDBLite consensus disorder prediction 85 127 - -
Car04g00624 127 MobiDBLite consensus disorder prediction 39 55 - -
Car04g00624 127 PANTHER NUCLEASE-RELATED 1 127 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00624 53 79 C2H2 Transcription Factor Family AT5G18550 59.259 9.65e-06 41.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Car04g00624 zf-U1 3e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00624 K13152 - gmx:100527203 173.326