LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car04g00613	ATGATTCCATCACAATCAAACACCCAACTCATGAATGTTGTCGTCAAACAATCTTTTCCTGATGACTCTGAGAGCTTCTATGCCAAACTCACCGACTTGTTGGACTCCTCTGGACTCACTCTCATTTTCAATGTCCGAGAAACATCCTTAGACTTATACCTTTTTTACTTGGAGGTCACTAGAAGAGGAGGATTTCACCAGGTTGGTCAACAAAAGAAATGGGGTGAAGTTGTTTGTGCACTAAAATTGGAAGGCAGTAATACAAAGTTATGTGCTCAAGTTGAAAAGCTCTATGCTCATCTTTTATACAAATTTGAGAAATTGTACTTCTACAGGTGCCCTGCAACTAGCAGCACCAAAGTTAAAAGAAAGCATGAAGATGATCTGATGGTGGAGAAGATGTCCAACGACTACTCTAGCCAAATGACAGGTGTTAGCTCTCAAGAACCTCAGGTGCTTCTACAATCACCATCAAATAACAAAGAAATGAAGAAACGGGGACAAAGTGGATATCAAATATTCCTCAAGCAGGAATGTGCGCGATTAAAAGCTTATTCTCAGGAAATAGATGGCACGAAAATCCTACGTATGGCTGTTGATGCATGGAAGAAGTTGTCTGACATTGAAAAACAGCCATATTTGGAGGAAAGCAAGAAGATAAGGGGGAAAAATAAGGCAGCAATGATCATTGAAAATAAACAGAAGAGCACTCATGAAGATCTTAAGAAGGATGAAAAGTGGCCTAGTATGTATAGTGGTGATTACTATGTAAGTTCACAGCCTCTTGCAAATTACTCTTTTGTTAACAATGCAGCAGGTCTTAAAATGACTGAAAAACCATCCAAGGATCCTTTATTTCTAGTTGGTTTTGACGCTTATCATTCGTCCAAGTGA	894	0.3915	MIPSQSNTQLMNVVVKQSFPDDSESFYAKLTDLLDSSGLTLIFNVRETSLDLYLFYLEVTRRGGFHQVGQQKKWGEVVCALKLEGSNTKLCAQVEKLYAHLLYKFEKLYFYRCPATSSTKVKRKHEDDLMVEKMSNDYSSQMTGVSSQEPQVLLQSPSNNKEMKKRGQSGYQIFLKQECARLKAYSQEIDGTKILRMAVDAWKKLSDIEKQPYLEESKKIRGKNKAAMIIENKQKSTHEDLKKDEKWPSMYSGDYYVSSQPLANYSFVNNAAGLKMTEKPSKDPLFLVGFDAYHSSK	297

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car04g00613	297	CDD	HMGB-UBF_HMG-box	165	219	-	-
	Car04g00613	297	Pfam	ARID/BRIGHT DNA binding domain	23	106	IPR001606	GO:0003677
	Car04g00613	297	ProSiteProfiles	HMG boxes A and B DNA-binding domains profile.	164	232	IPR009071	-
	Car04g00613	297	Pfam	HMG (high mobility group) box	165	228	IPR009071	-
	Car04g00613	297	SUPERFAMILY	ARID-like	5	111	IPR036431	GO:0003677
	Car04g00613	297	SUPERFAMILY	HMG-box	160	225	IPR036910	-
	Car04g00613	297	SMART	bright_3	21	111	IPR001606	GO:0003677
	Car04g00613	297	Gene3D	-	5	127	IPR036431	GO:0003677
	Car04g00613	297	ProSiteProfiles	ARID domain profile.	20	110	IPR001606	GO:0003677
	Car04g00613	297	SMART	ARID_2	17	106	-	-

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car04g00613	17	219	ARID Transcription Factor Family	AT1G55650	27.049	4.32e-11	60.8

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	ARID	Car04g00613		ARID	6.6e-12	CL0123

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car04g00613	-		-	mtr:MTR_5g095070	272.707

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