Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00613 ATGATTCCATCACAATCAAACACCCAACTCATGAATGTTGTCGTCAAACAATCTTTTCCTGATGACTCTGAGAGCTTCTATGCCAAACTCACCGACTTGTTGGACTCCTCTGGACTCACTCTCATTTTCAATGTCCGAGAAACATCCTTAGACTTATACCTTTTTTACTTGGAGGTCACTAGAAGAGGAGGATTTCACCAGGTTGGTCAACAAAAGAAATGGGGTGAAGTTGTTTGTGCACTAAAATTGGAAGGCAGTAATACAAAGTTATGTGCTCAAGTTGAAAAGCTCTATGCTCATCTTTTATACAAATTTGAGAAATTGTACTTCTACAGGTGCCCTGCAACTAGCAGCACCAAAGTTAAAAGAAAGCATGAAGATGATCTGATGGTGGAGAAGATGTCCAACGACTACTCTAGCCAAATGACAGGTGTTAGCTCTCAAGAACCTCAGGTGCTTCTACAATCACCATCAAATAACAAAGAAATGAAGAAACGGGGACAAAGTGGATATCAAATATTCCTCAAGCAGGAATGTGCGCGATTAAAAGCTTATTCTCAGGAAATAGATGGCACGAAAATCCTACGTATGGCTGTTGATGCATGGAAGAAGTTGTCTGACATTGAAAAACAGCCATATTTGGAGGAAAGCAAGAAGATAAGGGGGAAAAATAAGGCAGCAATGATCATTGAAAATAAACAGAAGAGCACTCATGAAGATCTTAAGAAGGATGAAAAGTGGCCTAGTATGTATAGTGGTGATTACTATGTAAGTTCACAGCCTCTTGCAAATTACTCTTTTGTTAACAATGCAGCAGGTCTTAAAATGACTGAAAAACCATCCAAGGATCCTTTATTTCTAGTTGGTTTTGACGCTTATCATTCGTCCAAGTGA 894 0.3915 MIPSQSNTQLMNVVVKQSFPDDSESFYAKLTDLLDSSGLTLIFNVRETSLDLYLFYLEVTRRGGFHQVGQQKKWGEVVCALKLEGSNTKLCAQVEKLYAHLLYKFEKLYFYRCPATSSTKVKRKHEDDLMVEKMSNDYSSQMTGVSSQEPQVLLQSPSNNKEMKKRGQSGYQIFLKQECARLKAYSQEIDGTKILRMAVDAWKKLSDIEKQPYLEESKKIRGKNKAAMIIENKQKSTHEDLKKDEKWPSMYSGDYYVSSQPLANYSFVNNAAGLKMTEKPSKDPLFLVGFDAYHSSK 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00613 297 CDD HMGB-UBF_HMG-box 165 219 - -
Car04g00613 297 Pfam ARID/BRIGHT DNA binding domain 23 106 IPR001606 GO:0003677
Car04g00613 297 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 164 232 IPR009071 -
Car04g00613 297 Pfam HMG (high mobility group) box 165 228 IPR009071 -
Car04g00613 297 SUPERFAMILY ARID-like 5 111 IPR036431 GO:0003677
Car04g00613 297 SUPERFAMILY HMG-box 160 225 IPR036910 -
Car04g00613 297 SMART bright_3 21 111 IPR001606 GO:0003677
Car04g00613 297 Gene3D - 5 127 IPR036431 GO:0003677
Car04g00613 297 ProSiteProfiles ARID domain profile. 20 110 IPR001606 GO:0003677
Car04g00613 297 SMART ARID_2 17 106 - -
Car04g00613 297 SMART hmgende2 163 233 IPR009071 -
Car04g00613 297 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 21 288 - -
Car04g00613 297 PANTHER HMG (HIGH MOBILITY GROUP) BOX PROTEIN 21 288 - -
Car04g00613 297 Gene3D High mobility group box domain 155 230 IPR036910 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00613 17 219 ARID Transcription Factor Family AT1G55650 27.049 4.32e-11 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Car04g00613 ARID 6.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00613 - - mtr:MTR_5g095070 272.707