Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00607 ATGATGGAAGTGGAACCTGTAGATCTAAGCGGGTTGGATCGGATTATTAAAAACCAGATCGCCACTCATCCTCTTTATCCAAACCTACTCTCTGCTTATATACAATGTCAACAGGTTGGAGCACCGACAGAAATTGCATCCCTTCTTGAAGAAATAGGGCGTGAAACTCACCAACCTCTTTCTCTCCGTCAGATAGGAGATGATCCTGACCTTGATCACTTCATGGAATCATACTGCCAAATTCTTCATAAATACAAAGAGGAGTTGTCCAAGCCTTTCAACGAAGCCACAATATTTTTGTGTAATATTGAATCACAACTTACCCAACTCTGCAAGGGTACGATAACAATCTCATCATCGGATTTTAACAACCCAGCTTCAGATCATGAGGCATCAGAGGATGAAATGAGTTGTGTAAAGGTTGAAGGATCAGTAGAAGGTGGTCATGGCACAATATGTTCAGGCAATAAAGAGCTTAAAGAAATGCTACTTCGTAAGTATGGTGGTTATCTTAGCAGTTTGAGAAAGGAATTTCTAAAGAAAAGGAAAAAGGGTAAACTACCAAAGGATGCCAGAAAAACATTGATGGAGTGGTGGAATGTTCACTATAGGTGGCCTTATCCCATGGAGGAGGAGAAATTGCAGCTATCAGAAATGACAGGACTTGATATAAAGCAGATAAATAATTGGTTCATAAATCAGAGGAAAAGGCACTGGAAACCATCTGAAGATATGCGATTTGCCATTATGGAAGGTGTAAGTGGCACAGCAGGAGGAGGACATCTCTAA 789 0.4056 MMEVEPVDLSGLDRIIKNQIATHPLYPNLLSAYIQCQQVGAPTEIASLLEEIGRETHQPLSLRQIGDDPDLDHFMESYCQILHKYKEELSKPFNEATIFLCNIESQLTQLCKGTITISSSDFNNPASDHEASEDEMSCVKVEGSVEGGHGTICSGNKELKEMLLRKYGGYLSSLRKEFLKKRKKGKLPKDARKTLMEWWNVHYRWPYPMEEEKLQLSEMTGLDIKQINNWFINQRKRHWKPSEDMRFAIMEGVSGTAGGGHL 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00607 262 SMART KNOX1_2 14 58 IPR005540 GO:0003677|GO:0005634
Car04g00607 262 CDD homeodomain 190 242 IPR001356 GO:0003677
Car04g00607 262 Pfam KNOX1 domain 16 57 IPR005540 GO:0003677|GO:0005634
Car04g00607 262 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 12 252 - -
Car04g00607 262 SMART HOX_1 180 245 IPR001356 GO:0003677
Car04g00607 262 SMART KNOX2_2 61 112 IPR005541 GO:0003677|GO:0005634
Car04g00607 262 Pfam ELK domain 158 179 IPR005539 GO:0003677
Car04g00607 262 SUPERFAMILY Homeodomain-like 180 249 IPR009057 -
Car04g00607 262 ProSiteProfiles 'Homeobox' domain profile. 178 241 IPR001356 GO:0003677
Car04g00607 262 Pfam Homeobox KN domain 198 237 IPR008422 GO:0003677|GO:0006355
Car04g00607 262 ProSitePatterns 'Homeobox' domain signature. 216 239 IPR017970 GO:0000981|GO:0006355
Car04g00607 262 ProSiteProfiles ELK domain profile. 158 178 IPR005539 GO:0003677
Car04g00607 262 Gene3D - 176 249 - -
Car04g00607 262 Pfam KNOX2 domain 64 111 IPR005541 GO:0003677|GO:0005634
Car04g00607 262 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 10 12 252 - -
Car04g00607 262 SMART ELK_2 158 179 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00607 Car-Chr4 6018927 6022630 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00607 15 256 Homeobox Transcription Factor Family AT1G70510 52.174 5.20e-82 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Car04g00607 KNOX2 5.8e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00607 - - cam:101509394 517.694