Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00594 atggaaacaggaagcagtagcaagaagaagaagcagcaacagaaacagcaacacgaTTTAGATTTAGAGAAAGTTCGGTTAATCAGTTTAGCTCTTGAATTCGGCTTCGACGAACACTCCGCTAACCAATCTTTCGATCGTCTTCTCGCTCTCTACGGTGACGATGGTCGTGATTTTATCACCGTTGAACATTGCGGCGATGATTTTCTCGCGGCTTTGGCGGAGTCAGCTCCAGACACTGAGGAATGGGATGATCTTCACGAAATGGAATCACAAGCTTGTGGAACTTTGAATCACGTGCTTGATGAAGGTCTTGCCACGTGCGTTGATGCTTCCGACTCGTTTATTGATATTGTTGACAATTCGCCTCAACCTAAGCAACACCGAGCCAAATTTGTGGAGTTGGGTTCAAGTGACGATGAGGATACAAATTTTCATCCTCCAAAGTCTGTGGATGGTAGAAGTGGCATTACTCAAGGCTCAGTTTCATCAACTTCCAGAAAAACACACTCCTCCTTTTCTTCAAATGGTAGAAATAGTATTCTCACATATGAAGAATTGCAGGCGCTAGATGATATTGAATTGGCAAATATTGTTATCTTCGGTAATATGACATTTCGAGCATTGCAGCATCAAGCATGTAAAGTAACTTTGGCAAAACAAGACTCTTTTATTCTTATGCCTACTGGGGGTGGTAAATCTCTTTGCTATCAGCTTCCAGCAACCCTTCAACCAGGAGTTACGGTAGTTGTATCTCCCTTACTTTCACTCATTCAGGATCAGATAATAACACTTAACCTCAAGTTTGGAATACCTGCTACTTTTTTAAATTCTCAACAAACTACTTCCCAAGCTGCAGCTGTTCTCCAAGAGCTGAGAAAAGACAAGCCTTCATGCAAGCTCTTGTATGTGACACCTGAGAGAATTGCCGGAAACCAATCATTTCTTGGGATTCTAAAATGCATGCATCAGAAGGGACAGCTAGCAGGTTTTGTTGTTGACGAGGCGCACTGTGTTAGCCAATGGGGACATGATTTCCGGCCTGATTATCGGGGATTAGGATCTCTCAAGCAAAACTTTCCAGATGTACCTGTCATGGCATTGACTGCCACTGCAACTCACCCAGTTCGCGAGGACATCTTAAATGCTTTAAGAATTCCACATGCAATTGTTCTTGAAAGAAGCTTTGACAGACCAAATTTGAAGTATGAAGTGATTGTTAAGACAAAGGAACCACTGAAGCAGCTTGCACAACTACTAGTGGATCGTTTCAAGAGTCAGTGTGGCATTGTATATTGCCTGTCAAAAAGTGAATGTGTCGAGGTATCAAAGTTTTTGACTGAGAAATGTAAAATTAAGGCAGCATATTACCATGCTGGCTTGGCTGTCCGCCAGAGAGTTGCTGTTCAAAAGAAATGGCACGATGGAGAGGTCCATATTGTATGTGCAACTATTGCTTTTGGAATGGGGATAGACAAACCTGATGTTCGATTTGTCATCCACAATACAATGTCAAAATCAATTGAAAGTTATTATCAAGAATCGGGAAGAGCTGGAAGAGACAATCTTCCTGCAGTTTGCATTGTTCTATACCAGAAGAAGGATTTTAGTAGAGTTGTATGCATGATAAGAAACGGCCAAGTATATAAAAAGGAGAGTTTTAAGACAGCAATGGTTCAAGCCAAAATGATGCAACAGTATTGTGAATTAAAGGTTGAATGCCGAAGACAAACCTTACTCAAACATTTCGGAGAATCATTCGATAGAAAGACCTGCAAGTATGGCTCTAGTCCTTGTGATAACTGTCTCAAGACTGCATCATCTAATTTTGAGGTACTAGAAGTAAGTATATACAAAAGTAACAAAATTGATCATCCAAGATTTTGTACTAAAACTTTGAAGAAAGCAGAAAGAGTTAAATATGGCACCGCTATAGATTCTTTCTTGGCCACATTAATCTGGGTATCTTCCTCGTTGGAGTCAACATTGGTTCCTGCTATATAG 2004 0.3957 METGSSSKKKKQQQKQQHDLDLEKVRLISLALEFGFDEHSANQSFDRLLALYGDDGRDFITVEHCGDDFLAALAESAPDTEEWDDLHEMESQACGTLNHVLDEGLATCVDASDSFIDIVDNSPQPKQHRAKFVELGSSDDEDTNFHPPKSVDGRSGITQGSVSSTSRKTHSSFSSNGRNSILTYEELQALDDIELANIVIFGNMTFRALQHQACKVTLAKQDSFILMPTGGGKSLCYQLPATLQPGVTVVVSPLLSLIQDQIITLNLKFGIPATFLNSQQTTSQAAAVLQELRKDKPSCKLLYVTPERIAGNQSFLGILKCMHQKGQLAGFVVDEAHCVSQWGHDFRPDYRGLGSLKQNFPDVPVMALTATATHPVREDILNALRIPHAIVLERSFDRPNLKYEVIVKTKEPLKQLAQLLVDRFKSQCGIVYCLSKSECVEVSKFLTEKCKIKAAYYHAGLAVRQRVAVQKKWHDGEVHIVCATIAFGMGIDKPDVRFVIHNTMSKSIESYYQESGRAGRDNLPAVCIVLYQKKDFSRVVCMIRNGQVYKKESFKTAMVQAKMMQQYCELKVECRRQTLLKHFGESFDRKTCKYGSSPCDNCLKTASSNFEVLEVSIYKSNKIDHPRFCTKTLKKAERVKYGTAIDSFLATLIWVSSSLESTLVPAI 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00594 667 Gene3D - 164 397 IPR027417 -
Car04g00594 667 MobiDBLite consensus disorder prediction 154 176 - -
Car04g00594 667 MobiDBLite consensus disorder prediction 134 176 - -
Car04g00594 667 CDD DEXHc_RecQ 200 397 - -
Car04g00594 667 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 214 390 IPR014001 -
Car04g00594 667 CDD SF2_C_RecQ 398 531 - -
Car04g00594 667 SMART ultradead3 202 406 IPR014001 -
Car04g00594 667 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 412 564 IPR001650 -
Car04g00594 667 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 200 612 IPR004589 GO:0004386|GO:0006310
Car04g00594 667 SMART helicmild6 440 522 IPR001650 -
Car04g00594 667 Pfam RecQ zinc-binding 534 603 IPR032284 -
Car04g00594 667 Gene3D - 398 606 IPR027417 -
Car04g00594 667 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 245 543 IPR027417 -
Car04g00594 667 MobiDBLite consensus disorder prediction 134 148 - -
Car04g00594 667 PANTHER BLOOM SYNDROME PROTEIN 39 615 - -
Car04g00594 667 Pfam Helicase conserved C-terminal domain 414 521 IPR001650 -
Car04g00594 667 PANTHER DNA HELICASE RECQ FAMILY MEMBER 39 615 - -
Car04g00594 667 Pfam DEAD/DEAH box helicase 208 376 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00594 Car-Chr4 5918504 5924185 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00594 331 520 Eukaryotic Initiation Factors Gene Family AT5G11170 26.154 4.61e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00594 K10899 - gmx:100806070 986.482