Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00590 ATGGCGTCAAGGAATCGCACTTTGCTTTTCCGTAAGTATAGAGATGCATTGAAGAGTGTTCGTGCTCCGTCAACCTCTTCGCCACCGTCCACCTCTTCCGCCGGTGGTCCCGTCATCGAATTGGTCAGCACATCGCTTCTCAATCCCAATCGCTCTTACGCTCCGCTTAGTACCGAAGATCCCGGTAATTCAAGTAAGGGTCCAAATGCAATTACTGTGGGGCTACCTCCAGCGTGGGTGGATGTATCTGAAGAAATATCAGCAAATGTGCAACGTGCACGCAAAAAAATGGCAGAGTTGTCCAAGGCTCATGCGAAGGCTTTAATGCCATCGTTTGGAGATGGTAAGGATGACCAACATGCTATTGAGTCTCTAACACATGAGGTAACTGACTTGATAAAGAGATCAGAGAAGAGGCTGCGGAGACTTGCTGCTTCAGGGCCCTCTGAGGATTCCAATGTCAGGAAAAATGTGCAGCGTTCTCTTGCCACTGACCTTCAGAACCTATCTGTAGAGCTTCGCAAGAAACAGTCAACTTATTTGAAGCGCCTCAGACAGCAAAAAGAGGGTCAAGATGGGGTTGATCTAGAGATCAACATGAATGGAAGTAAATCTAGATTTGAAGATGATGACTTGGATAATATGATATTTAACGAGCATCAGATGGCCAAGCTAAAAAAAAGCGAAGCTTTCACAGTTGAAAGAGAAAAAGAGATCCAACAGGTTGTGGAATCCGTTAACGAGCTTGCTCAGATTATGAAGGATTTATCAGTACTAGTCATAGACCAGGGAACCATTGTTGATAGAATAGACTACAACATTCAAAATGTAGCAACCACAGTTGAGGATGGCCTTAAACAACTACAGAAGGCAGAGAGATCTCAGAAAAAGGGGGGCATGGTAATGTGTGCTTCGGTGCTTCTTATCATGTGCTTTGTTATGTTGGTTTTCTTAGTCATAAAGGAAATTATTTGGTGA 978 0.4417 MASRNRTLLFRKYRDALKSVRAPSTSSPPSTSSAGGPVIELVSTSLLNPNRSYAPLSTEDPGNSSKGPNAITVGLPPAWVDVSEEISANVQRARKKMAELSKAHAKALMPSFGDGKDDQHAIESLTHEVTDLIKRSEKRLRRLAASGPSEDSNVRKNVQRSLATDLQNLSVELRKKQSTYLKRLRQQKEGQDGVDLEINMNGSKSRFEDDDLDNMIFNEHQMAKLKKSEAFTVEREKEIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVEDGLKQLQKAERSQKKGGMVMCASVLLIMCFVMLVFLVIKEIIW 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00590 325 CDD SNARE_syntaxin16 234 290 - -
Car04g00590 325 Coils Coil 83 103 - -
Car04g00590 325 ProSitePatterns Syntaxin / epimorphin family signature. 235 274 IPR006012 GO:0005484|GO:0006886|GO:0016020
Car04g00590 325 PANTHER TARGET SNARE COILED-COIL-LIKE DOMAIN-CONTAINING PROTEIN-RELATED 1 319 - -
Car04g00590 325 SMART tSNARE_6 224 291 IPR000727 -
Car04g00590 325 SMART SynN_4 70 185 IPR006011 GO:0016020
Car04g00590 325 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 229 291 IPR000727 -
Car04g00590 325 Gene3D - 76 283 - -
Car04g00590 325 PANTHER SYNTAXIN 1 319 IPR045242 -
Car04g00590 325 Pfam SNARE domain 265 316 IPR000727 -
Car04g00590 325 MobiDBLite consensus disorder prediction 50 70 - -
Car04g00590 325 SUPERFAMILY t-snare proteins 75 284 IPR010989 GO:0016020|GO:0016192
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00590 1 324 SNARE and Associated Proteins AT5G26980 78.221 0.0 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00590 K08489 - gmx:100796741 553.132