Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00582 ATGTGCATCCACAGCAAGTGTTGCTTCAATTTCGTCCCATCTCATTTTCTTTTGCAACGGAATTTCGTTCCATCTCATTATTTTACCATGTTACCCTTTAGCAACAGAAACCAAACGATACACTTTAAAAAGACTGGAGAAATAAGTCCAATCCTACTTTCTTATACTATTCAGTTGCAGTATAAACAGTTCAAGTGGCTTCTAAGGAAGAAAGCATCACAAGTTCTCTATTTACAGTTCGCTTTGCGGAAACGTGCAATCATTCAAGAATTTCATGACAAGCAAGGGCAGGTAAAAGAGTGGCTTCATAGCTTAGGAATAGTAGATCAAACAGTAATGGTGCAAGATGACGAAGAACCGGATGATGGAGCTGTACCTATACATCATGAAGACAGTACTAAAAACAGATATGTCCCATCTGTTGCTGCTCTATCAATAATCCGTCCATCACTAGGTGGTCAGCAGTCAGGTGCAGATAGAGCCAAAGTTGCAATGCAGAGTTATTTGGATCTTTTTTTAGGAAACCTAGAGATTGTGAATTCTCGAGAGGTCTGCAAGTTTTTGGACGTCTCCAAGCTATCCTTCTTACCAGAGTATGGTCCAAAACTGAGAGAGGGATATGTAATGGTGAAGCATTTGTCAAATATTTCACAGGATTCAGATGTAACATGCTTTCCATGTCATTGGTTTCACTTTTGTGATAACAATTGGAAAAAGGTATGGGCTGTTTTGAAACCTGGGTTTTTGGCCTTGCTGGATGATCCCTTTAACAACAAGCCACTGGATATAATTATGTTTGATATCCTTCCGTCGTCAACTGGAAAGGGACGGACCAAAATATATTTAGCTGAATCTATAAAAGAACGCAATCCTTTGCGCTACACATTTAAGGTTACTAGTGGAAACAGGAGCATATGCTTGAGAGCTACCAGCAGTGCTAAAGTTAAAACTTGGGTTACTGCAATTAATGAAACTGGTCTAAGACCTATGGAGGGTTGGTGTTATCCTCATCGCTTTGGTTCATTTTCTCCGGTAAGAGGTTTGACTGTAGATGGGAGTCAAGCCCAATGGTATGTAGATGGACAAGCAGCATTTGAAGCAATAGCTTCTTCAATTCAAGATGCAAAATCAGAGATCTTCATAACAGGTTGGTGGCTGTGTCCAGAGCTATACATGAGGCGGCCTTTTCATAGTTTTCCTACCTTTCGGTTAGACTCATTACTGGAAGAGAAAGCTAAACAAGGGGTTCAGATTTATGTGCTTCTCTACAAGGAGGTTTCTATAGCTTTGAAAATCAACAGCTTGTACAGTATGAGAAGACTGCTCAAAATTCATGAAAACGTGAGGGTATTACGCTATCCCGACCATTTTGCTTCCCGTGTGTATTTATGGTCGCACCATGAAAAACTTGTAATTATTGATTACAAGATTTGCTTTCTTGGAGGATTAGACTTATGCTTTGGACGATATGACACACCTGAACATAAAGTGGGTGATGACCCCTCTGTAATATGGCCTGGAAAGGACTATTACAATCCAAGAGAATCTGAACCAAATTCATGGGAAGACACCATGAGAGACGAATTGGATCGCCAAAAATATCCCCGTATGCCATGGCATGATGTCCATTGTGCTATCTGGGGACCTCCCTGTCGTGACATTGCTCGACACTTTGTTCAACGTTGGAATCATGCTAAGAGAACTAAAGCTCCAAACGAACATGAAATTCCTCTACTTATGCCTCACCATCAAATGGTCATCCCACATTACATGGGAAAAAGCAAAGAGATTGACGTTATTGGAAAGAAGGAAGAAGACAACGAGAAAGAAATTGACAGGCAGGATTCATTCTCCTCACAATCTCCATTGCAAGATATACCGCTACTTCTACCTCAAGAAGCTGATGGAGCAGTGACTTCAAGTGGAGATTATAGAAATTCCAGCGAAAGTTCTCCATTACTGTCCCAAAATCTGGAAAGTGAAACATTAGTTCCAGATAACCAGAAGAAAGGGTTTCAGGATCAAGCTGATTCTTTTGACTTGAGGGCTCAATACATTGTTGATGCTGTAGATAATTGGTGGGAAACACCAGAAGGTACCGATGATGCCACTACTTTGGAATATGGAGAAGTTGGTCCACGTACCACCTGTCACTGTCAGGTAATCAGAAGTGTAAGCCAGTGGTCTGTTGGAACAAGTCAACCTGAAGAAAGCATTCACACTGCACATTGTTCTCTTATTGAAAAGGCAAAGCATTTCATCTACATTGAGAACCAATTTTTCATATCAGGTCTAGCAACGGATGGTACAATACAGAACCGTGTTTTGGAAGCAATATACAGACGTATTTTACAAGCACATAAAGAACAGAAAGATTTTAGAGTTATAATTGTGATACCCCTCTTGCCTGGTTTCCAGGGTGGTCTGGATGATGGTGGTGCTGCAACTGTGAGAGCCTTAACACATTGGCAGTATAGGACAATTTCTAGAGAAAGGCACTCCATATTACACAATCTTGAAGCTATACTTGGTTCGAAGGCACATGATTATATTTCTTTTTATGGTTTAAGATCTCATGGTAGACTTTATCCAGATGGTCCTATGGCTACAAGTCAGGTATATGTGCACAGTAAGTTGATGATAATTGATGACCGTGTAGCTTTGATTGGATCATCTAATATAAATGACCGGAGTTTGCTTGGATCAAGAGACTCTGAGATCGGAGTTGTTATAGAAGATAAAGAATATGTTGAATCGTTGATGAATGGAAAGCCGTGGAAGGCTGGGAAATTTTCCCATAGTCTCCGCTGTTCCCTATGGTCTGAGCATCTTGGTCTTCATAATGGAGAGATCAGTAAAATCATTGATCCAGTGGCTGATTCAACCTACAAGGATTTATGGTCAGCAACCGCAAAGGAAAATACTAGAATCTACCATGAAATCTTTGCTTGCATTCCCAATGATCAGATACACTCAAGAGCTGCACTTCGGCAAAACATGGTCCAATGGAAGGAAAAACTTGGCCAAACGACCATAGATTTGGGAATAGCCCCTGATAAGTTAGTCTGTCATGAGAATGGAGAAACAAAAGTAATAGATCCAATAGATAGATTGAAGTGTATAGAGGGACATCTTGTTTCCTTTCCTTTGGATTTCATGCGAGAGGAAGATTTAAGACCAGCTGTTATTGAGAGTGAGTTTTATGTATCTACTCAAATTTTGGTTTTTGAGGAACTTGGGTGGAGCTGGAAGTTGCAAAGTTCTCAACTTTTTGAATTTTATCTGTTGAATTTCATTCAATTTTGCAGCATTATTAAAAGATTTTGTTTACAAGATATTGAAGAGTTGATGGGTCACTTTTCATCTGTGTTCAATGGGTTGGCAAAGTCATTAGCAATGAAGAAAAGGAGTAAATGTAGCGGGAGAGAAGCTGCTGAAGCAATGGCAAAGGAAGCAAAAAGAAATCACTCTATACTCCATAGTTCTGGCACTGTTAATGTTGATGGTTCAAACAACTTTGCCTCAATTTTCTCCAAAAGAGGCAAGAAAGGAGTTAACCAAGATTGTTGCATAGTGTGGGAAGAATTTGGATGCCAAGAGGACATGATATTCTGTGGGATTTTTGATGGGCATGGTCCTTGGGGTCACTATGTGTCAAGAAGTGTAAGAGAATCAATGCCATCATCTTTGCTATGCAATTGGCAAGAGACACTTTCACAAACTTCACTTGATCCAGATGTTGATTTAGAGACACAGAAAAAACAACAAAGGTTTAATATATGGGAACATTCTTACTTGAAGACATGTGCTGCCATTGATCGTGAACTTGAGCAGAATCGCAAGATTGATTCTTTTTTCAGCGGAACAACTGCATTATCAATTGTTAGACAGGGTGAACTGATTGTGATTGCAAATGTTGGCGATTCTCGCGCAGTTTTAGCTACAACATCAGATGATGGAAATgtgcaccgcgtgtggttgccagacgaggagtctccaggactagccatgtcaagggcttttggtgattattgtattaaagagtatggtcttatttcagtgcctgaagtaacacaaagaaatataacaagcagagatcaatttgttgtgctagccactgatgggGTGTGGGATGTAATATCCAACCAAGAAGCAGTGGATATTGTATCTTCAACAAAAGACAGAACAAGTTCAGCTAAACATTTGGTGGAGTGTGCAATGCATGCATGGAAACGTAAGAGGCGTGGTATTGCTATGGATGACATTTCAGCTATATGTCTATTTTTTCATTCCTAG 4296 0.3838 MCIHSKCCFNFVPSHFLLQRNFVPSHYFTMLPFSNRNQTIHFKKTGEISPILLSYTIQLQYKQFKWLLRKKASQVLYLQFALRKRAIIQEFHDKQGQVKEWLHSLGIVDQTVMVQDDEEPDDGAVPIHHEDSTKNRYVPSVAALSIIRPSLGGQQSGADRAKVAMQSYLDLFLGNLEIVNSREVCKFLDVSKLSFLPEYGPKLREGYVMVKHLSNISQDSDVTCFPCHWFHFCDNNWKKVWAVLKPGFLALLDDPFNNKPLDIIMFDILPSSTGKGRTKIYLAESIKERNPLRYTFKVTSGNRSICLRATSSAKVKTWVTAINETGLRPMEGWCYPHRFGSFSPVRGLTVDGSQAQWYVDGQAAFEAIASSIQDAKSEIFITGWWLCPELYMRRPFHSFPTFRLDSLLEEKAKQGVQIYVLLYKEVSIALKINSLYSMRRLLKIHENVRVLRYPDHFASRVYLWSHHEKLVIIDYKICFLGGLDLCFGRYDTPEHKVGDDPSVIWPGKDYYNPRESEPNSWEDTMRDELDRQKYPRMPWHDVHCAIWGPPCRDIARHFVQRWNHAKRTKAPNEHEIPLLMPHHQMVIPHYMGKSKEIDVIGKKEEDNEKEIDRQDSFSSQSPLQDIPLLLPQEADGAVTSSGDYRNSSESSPLLSQNLESETLVPDNQKKGFQDQADSFDLRAQYIVDAVDNWWETPEGTDDATTLEYGEVGPRTTCHCQVIRSVSQWSVGTSQPEESIHTAHCSLIEKAKHFIYIENQFFISGLATDGTIQNRVLEAIYRRILQAHKEQKDFRVIIVIPLLPGFQGGLDDGGAATVRALTHWQYRTISRERHSILHNLEAILGSKAHDYISFYGLRSHGRLYPDGPMATSQVYVHSKLMIIDDRVALIGSSNINDRSLLGSRDSEIGVVIEDKEYVESLMNGKPWKAGKFSHSLRCSLWSEHLGLHNGEISKIIDPVADSTYKDLWSATAKENTRIYHEIFACIPNDQIHSRAALRQNMVQWKEKLGQTTIDLGIAPDKLVCHENGETKVIDPIDRLKCIEGHLVSFPLDFMREEDLRPAVIESEFYVSTQILVFEELGWSWKLQSSQLFEFYLLNFIQFCSIIKRFCLQDIEELMGHFSSVFNGLAKSLAMKKRSKCSGREAAEAMAKEAKRNHSILHSSGTVNVDGSNNFASIFSKRGKKGVNQDCCIVWEEFGCQEDMIFCGIFDGHGPWGHYVSRSVRESMPSSLLCNWQETLSQTSLDPDVDLETQKKQQRFNIWEHSYLKTCAAIDRELEQNRKIDSFFSGTTALSIVRQGELIVIANVGDSRAVLATTSDDGNVHRVWLPDEESPGLAMSRAFGDYCIKEYGLISVPEVTQRNITSRDQFVVLATDGVWDVISNQEAVDIVSSTKDRTSSAKHLVECAMHAWKRKRRGIAMDDISAICLFFHS 1431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00582 1431 Pfam Phospholipase D Active site motif 462 489 IPR001736 GO:0003824
Car04g00582 1431 Pfam PH domain 204 324 IPR001849 -
Car04g00582 1431 PANTHER PHOSPHOLIPASE D 22 1071 IPR015679 -
Car04g00582 1431 MobiDBLite consensus disorder prediction 639 657 - -
Car04g00582 1431 CDD PLDc_vPLD1_2_yPLD_like_2 731 915 - -
Car04g00582 1431 SUPERFAMILY PP2C-like 1173 1430 IPR036457 -
Car04g00582 1431 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 462 489 IPR001736 GO:0003824
Car04g00582 1431 Gene3D - 203 325 IPR011993 -
Car04g00582 1431 PANTHER PHOSPHOLIPASE D ZETA 2 22 1071 - -
Car04g00582 1431 SUPERFAMILY Phospholipase D/nuclease 710 921 - -
Car04g00582 1431 SMART PP2C_4 1160 1427 IPR001932 -
Car04g00582 1431 SUPERFAMILY PH domain-like 234 324 - -
Car04g00582 1431 Pfam PLD-like domain 745 918 IPR025202 -
Car04g00582 1431 CDD PLDc_vPLD1_2_yPLD_like_1 355 500 - -
Car04g00582 1431 SUPERFAMILY Phospholipase D/nuclease 325 582 - -
Car04g00582 1431 Gene3D - 1164 1430 IPR036457 -
Car04g00582 1431 MobiDBLite consensus disorder prediction 636 657 - -
Car04g00582 1431 Gene3D Endonuclease Chain A 348 586 - -
Car04g00582 1431 SMART PH_update 202 329 IPR001849 -
Car04g00582 1431 Pfam Protein phosphatase 2C 1335 1399 IPR001932 -
Car04g00582 1431 Pfam Protein phosphatase 2C 1251 1320 IPR001932 -
Car04g00582 1431 ProSiteProfiles PPM-type phosphatase domain profile. 1173 1429 IPR001932 -
Car04g00582 1431 CDD PP2Cc 1172 1429 IPR001932 -
Car04g00582 1431 CDD PH_PLD 179 325 - -
Car04g00582 1431 ProSiteProfiles PH domain profile. 201 327 IPR001849 -
Car04g00582 1431 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 871 898 IPR001736 GO:0003824
Car04g00582 1431 SMART pld_4 871 898 IPR001736 GO:0003824
Car04g00582 1431 SMART pld_4 462 489 IPR001736 GO:0003824
Car04g00582 1431 Gene3D Endonuclease Chain A 692 934 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00582 Car-Chr4 5808820 5826573 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00582 45 1074 Phospholipase D Gene Family (Wang group) AT3G05630 65.481 0.0 1375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00582 K01115 - gmx:100796914 1828.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02934 03 74606468 74609341 Car04g00582 04 5808820 5826573 PCT
Car05g01441 05 58634591 58636823 Car04g00582 04 5808820 5826573 PCT