Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00578 ATGAACACATCAACAACCTTATACTTGTACATTCTTGTTTCCCTCTTTATTATCCTCTTCCTCTCTCCCTCCTCTCTAGCTTCTCTCCCTTCCTCCCCAAATACCACTTGTCAAATTACACCTTACCCATCATTTTGCACAACCACTTTGCCTTCTAATTATTTATCCATTCATGACCAATGCAATTTCTTCCTTCAACAATCCTTATCAATAACTAACACAATTTTTCAATTAATCTCTTCTTATCTTAAAAACCACTTCACCATCATTCCATATCCCACATTACTTGTACTTGAGGATTGTCTTAATCTTGCTGAATTAAACACTGGTTTCTTATCCAATGTAATCCAAGCCATAGAAACCACTATAAGTAATAATCAAGTTTATGATTTGCAAACCTTGCTTAGTGCTGTTTTAACCAATCATCAAACATGTTTAGATGGTTTTCATGATTTAAATCCTTATCCAAAAATTACAACTAGTTTATTAAACCATCTTTCTGATGGAATCAAACTTTATAGCACATCTCTTGCTCTTTTCACACGTGGATGGTATATCAATGCAATTGGAGGAAAAGGAAGTGATTCAACAATGAATAATAGAAAGTTGGTAGAGACAAATTATGGGGACAATGTAACGGTGACAAAAAAAGTGATTGTTAATCCTAATGGATCTGGACATTTCATTACTATAAATGATGCTGTGAATGCTGCACCTAACAAAACAGGTACCAACAATGGGTACTATGTGATTTATGTTGTTGCAGGGATTTATAATGAGTATGTGTTTATTGCTAAGAACAAAGAGAATCTGATGATCGTTGGAGATGGAATCAATCGGACTGTGATCACTGGTAGTCGTAGTGTGCTTGATGGTTGGACCACTTTTCAGTCTGCAACTTTTGCTGTAATTGGAAAAGGATTTGTTGCAATGAACATAACATTTCGAAATACCGCGGGACCCAACAAACATCAAGCAGTTGCGGTAAGAAACGGAGCTGACATGTCTGTTTTCTACAATTGTAGCTTCGAAGGTTACCAAGACACACTATATGCACATTCCCTTCGACAATTCTACAAAAAATGTGACATTTATGGTACAGTTGATTTCATATTTGGCAATGCAGCAGCAATATTCCAAGATTGTAACATGTATCCAAGACTCCCCATGCAAAATCAATTCAATGCAATAACAGCACAAGGAAGAACAGATCCTAATCAAAACACAGGGTTCTCTATATGGAATTGTTGCATTGTAGCAGCTAGTGAATTAGGTGATGCAATTAATAATTATAATTATATAAAAACATATTTGGGTAGGCCTTGGAAGGAGTATTCAAGGACAATTTATATGAAATCTTTTATGGATGGTTTAATTGATCCAAAGGGTTGGATGGAATGGTCAGGGGAATTTGCATTAAGGACTCTGTATTATTCAGAGTATGGTAATTGGGGAAAAGGTTCAAACACTAGTAATAGGGTCACATGGGAAGGGTACCATTTAATTGATGAAAAAGATGCTGATGAATTCACGGTTTATAAATTTATACAAGGTCACAACTGGTTGCCTGTCACAGGGGTGCCTTTCAGAGCTGGGTTACACTGA 1605 0.3607 MNTSTTLYLYILVSLFIILFLSPSSLASLPSSPNTTCQITPYPSFCTTTLPSNYLSIHDQCNFFLQQSLSITNTIFQLISSYLKNHFTIIPYPTLLVLEDCLNLAELNTGFLSNVIQAIETTISNNQVYDLQTLLSAVLTNHQTCLDGFHDLNPYPKITTSLLNHLSDGIKLYSTSLALFTRGWYINAIGGKGSDSTMNNRKLVETNYGDNVTVTKKVIVNPNGSGHFITINDAVNAAPNKTGTNNGYYVIYVVAGIYNEYVFIAKNKENLMIVGDGINRTVITGSRSVLDGWTTFQSATFAVIGKGFVAMNITFRNTAGPNKHQAVAVRNGADMSVFYNCSFEGYQDTLYAHSLRQFYKKCDIYGTVDFIFGNAAAIFQDCNMYPRLPMQNQFNAITAQGRTDPNQNTGFSIWNCCIVAASELGDAINNYNYIKTYLGRPWKEYSRTIYMKSFMDGLIDPKGWMEWSGEFALRTLYYSEYGNWGKGSNTSNRVTWEGYHLIDEKDADEFTVYKFIQGHNWLPVTGVPFRAGLH 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00578 534 CDD PMEI-like_3 35 184 - -
Car04g00578 534 Pfam Pectinesterase 218 518 IPR000070 GO:0030599|GO:0042545
Car04g00578 534 PANTHER PECTINESTERASE 15 532 - -
Car04g00578 534 Gene3D Invertase/pectin methylesterase inhibitor family protein 31 182 IPR035513 -
Car04g00578 534 Pfam Plant invertase/pectin methylesterase inhibitor 34 179 IPR006501 GO:0004857
Car04g00578 534 SMART PMEI_2 28 179 IPR006501 GO:0004857
Car04g00578 534 Gene3D - 211 533 IPR012334 -
Car04g00578 534 ProSitePatterns Pectinesterase signature 2. 364 373 IPR033131 -
Car04g00578 534 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 17-RELATED 15 532 - -
Car04g00578 534 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 34 182 IPR035513 -
Car04g00578 534 TIGRFAM PME_inhib: pectinesterase inhibitor domain 12 170 IPR006501 GO:0004857
Car04g00578 534 SUPERFAMILY Pectin lyase-like 215 532 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00578 Car-Chr4 5778774 5782156 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00578 12 533 Carbohydrate Esterase AT4G02330 49.912 0.0 536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00578 K01051 - gmx:100810329 791.186