Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00576 ATGTCTGGAGGAGATGCAAACAAAGGTAGGAGAATCGCCATAATTGGTGTTTCTACCTTGTTATTGGTGGCTATGGTTGTTGCTGTTACCGTTGGTGCAAATCGCAATCAAAATGGTTATGATGATGATATTGAAGACAACCAAAGGAACCATATTGCTTCAACAATGAAAGCAGTTCAAACCATCTGCCATCCCACTGAATACAAGAAGGAATGTGAGGAAACCCTTGTGGCTGAAGCACAGGCTGACAATGTCACGGATCCAAAAGAGCTTATTAAAATAGCATTCAATGTTACTATGAGAAGAATTAGTGAAAAAATTAAGGAAACCGATCTCATGCACGAGGTTGAGAAAGATCCTAGATCCAAGGATGCACTTGATACATGCAAGCAACTTATGGATCTTTCTATCGGAGAATTCACAAGGTCACTTGATGGTTTTAGCCAGTTTGATCTTCAAGATATGGACAAAATCCTCATGAATTTGAAGGTTTGGCTTAATGGTGCTGTCACATACATGGATACATGTGTGGATGGATTTGATAACACTACTACCGAAGCTGGTGCAAAGATGAAAGAGTTGTTGACATCAAGCATGCACATGGGTAGCAATGCTCTTGCCATTATTTCAGATTTTGCTGACACTCTTGCCGATTGGAACGCCACTAAGGTTTTTGGACGTCGTCTCCTTCATGATTCTGAGACTCCTTCTTGGGTTGATCATCGCCAACTCATTGATACTAAGACAAATACATTCAGACACAAGCCTAATGTTACCGTTGCTTTAGATGGTACCGGTGACTTTAAGACCATCAATGAGGCATTGGCTAAGGTTCCTGAGAAGACCAAAAAACCATTCATCATCTACATTAAGGAAGGTGTTTATTCAGAGTATGTTGAGGTTACCAAGCGTATGACACACGTTGTGTTTGTTGGTGATGGTGGCAAAAAGTCTGTTATCACTGGCAACAAAAACTTTATCGATGGTGTTAACACCTACAGAACCGCCTCTGTTGCTATTCAAGGAGATCACTTTACAGCCATTAACATGGGTTTTGAGAACTCAGCTGGGCCACATAAACATCAAGCAGTGGCACTAAGGGTTCAAGGAGATAAGAGCATCTTCTTCAATTGCTCAATGGATGGTTACCAAGACACACTTTATGTACACACCATGCGTCAATTCTATCGTGATTGCACCATTTCAGGTACCATTGACTTTGTGTTTGGCAATGCACTAGCAGTCTTCCAAAACTGCAAATTTGTTGTGAGAAAGCCAATGTCAAACCAACAATGCATTGTGACCGCACAAGGAAGGAAGGAAAGATTCCAACCATCAGCAATAGTGATCCAAGGAGGTTCCATTGTCTCTGATCCTGAGTTCTACCCAGTGAGATTTGACAACAAGGCCTACCTCGCCCGCCCATGGAAGAACTTTTCTAGGACTATCATCATGGACGCTTTCATCGATGATTTGATTCATCCTGATGGTTATTTGCCATGGCAAACAATTGAGGGTCCTTCCGGCATGGACACTTGCTTCTATGCTGAATATCATAACTTTGGCCCTGGTTCTGACAAGACAAAGCGTGTACATTGGGCTGGTATTTGGAACCTCAATGCAAAGGCTGCACATTGGTTTGCACCATCCAAGTTCTTCCATGGTGGTGACTGGATTGAAGCAACTGGAATTCCTTTCTTTTCTACCATTCCTGATCACCATAGACACAAAAAGACAATGCTTAAATGGTGA 1752 0.4201 MSGGDANKGRRIAIIGVSTLLLVAMVVAVTVGANRNQNGYDDDIEDNQRNHIASTMKAVQTICHPTEYKKECEETLVAEAQADNVTDPKELIKIAFNVTMRRISEKIKETDLMHEVEKDPRSKDALDTCKQLMDLSIGEFTRSLDGFSQFDLQDMDKILMNLKVWLNGAVTYMDTCVDGFDNTTTEAGAKMKELLTSSMHMGSNALAIISDFADTLADWNATKVFGRRLLHDSETPSWVDHRQLIDTKTNTFRHKPNVTVALDGTGDFKTINEALAKVPEKTKKPFIIYIKEGVYSEYVEVTKRMTHVVFVGDGGKKSVITGNKNFIDGVNTYRTASVAIQGDHFTAINMGFENSAGPHKHQAVALRVQGDKSIFFNCSMDGYQDTLYVHTMRQFYRDCTISGTIDFVFGNALAVFQNCKFVVRKPMSNQQCIVTAQGRKERFQPSAIVIQGGSIVSDPEFYPVRFDNKAYLARPWKNFSRTIIMDAFIDDLIHPDGYLPWQTIEGPSGMDTCFYAEYHNFGPGSDKTKRVHWAGIWNLNAKAAHWFAPSKFFHGGDWIEATGIPFFSTIPDHHRHKKTMLKW 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00576 583 PANTHER PECTINESTERASE 10 571 - -
Car04g00576 583 ProSitePatterns Pectinesterase signature 2. 401 410 IPR033131 -
Car04g00576 583 SUPERFAMILY Pectin lyase-like 254 569 IPR011050 -
Car04g00576 583 Gene3D Invertase/pectin methylesterase inhibitor family protein 53 212 IPR035513 -
Car04g00576 583 Pfam Plant invertase/pectin methylesterase inhibitor 58 208 IPR006501 GO:0004857
Car04g00576 583 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 57 212 IPR035513 -
Car04g00576 583 CDD PMEI-like_3 61 213 - -
Car04g00576 583 TIGRFAM PME_inhib: pectinesterase inhibitor domain 55 210 IPR006501 GO:0004857
Car04g00576 583 Pfam Pectinesterase 257 555 IPR000070 GO:0030599|GO:0042545
Car04g00576 583 PANTHER PECTINESTERASE 10 571 - -
Car04g00576 583 Gene3D - 251 570 IPR012334 -
Car04g00576 583 SMART PMEI_2 54 208 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00576 Car-Chr4 5770972 5773343 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00576 5 566 Carbohydrate Esterase AT3G05610 46.986 0.0 570
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00576 K01051 - gmx:100776244 954.51