Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00570 ATGAGTGGCCGATCAAGTCGCACATTATATGTTGGCAATCTTCCTGGTGATATTCGCATGAGAGAAGTGGAGGATCTTTTCTACAAGTATGGCCCTATCGTTGACATTGATTTGAAGATCCCTCCAAAACCACCAGGTTATGCTTTTGTCGAGTTTGAGGATGCTCGTGATGCTCAAGATGCGATTTACTATAGAGATGGTTACGATTTTGATGGTTATCGATTACGAGTTGAACTTGCACATGGTGGACGCAGAAATTCATCATCTGTGGACCGATACAGTAGGCATAGCGGTAGTAGTGGTAGTCGTGGAGTTTCTAGGCGATCTGACTATCGTGTTCTGGTGACTGGATTACCTCCTTCTGCTTCATGGCAAGACCTGAAAGATCACATGCGTAAAGCTGGTGATGTGTGTTTTTCTCAAGTGTTCCGTGAGCGTGGAGGCTTGACCGGGATAGTTGATTATACCAATTATGATGATGTGAAATATGCTGTGAGGAAGCTTGATGACTCGGAATTTCGAAATGCATTTTCTCGGGCATACATACGGGTGAGGGAATATGATCGGAGTTATTCTAGAAGTCCCAGTCGTGATTCAAGGAGGAGCTATTCTCGAAGTCGCAGCCCATATATATCACGAAGTCGAAGCCGTAGTCTAAGTCATAGCTACAGTGGCAGGAGCAGAAGTTTGTCTCCAAAAGCAAAACACTCTCGGCGCTCATTATCTCTTTCAAGACTTATCAGCATAGTTCTTCATATGTGGAAACGTGGAGAGGGTTGA 780 0.4449 MSGRSSRTLYVGNLPGDIRMREVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAIYYRDGYDFDGYRLRVELAHGGRRNSSSVDRYSRHSGSSGSRGVSRRSDYRVLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGLTGIVDYTNYDDVKYAVRKLDDSEFRNAFSRAYIRVREYDRSYSRSPSRDSRRSYSRSRSPYISRSRSRSLSHSYSGRSRSLSPKAKHSRRSLSLSRLISIVLHMWKRGEG 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00570 259 Gene3D - 2 111 IPR012677 -
Car04g00570 259 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 175 IPR000504 GO:0003723
Car04g00570 259 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Car04g00570 259 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Car04g00570 259 SUPERFAMILY RNA-binding domain, RBD 5 178 IPR035979 GO:0003676
Car04g00570 259 CDD RRM1_SF2_plant_like 8 79 - -
Car04g00570 259 MobiDBLite consensus disorder prediction 92 106 - -
Car04g00570 259 Gene3D - 112 188 IPR012677 -
Car04g00570 259 MobiDBLite consensus disorder prediction 205 230 - -
Car04g00570 259 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
Car04g00570 259 PANTHER PRE-MRNA-SPLICING FACTOR SF2-LIKE PROTEIN 3 252 - -
Car04g00570 259 CDD RRM2_SF2_plant_like 111 186 - -
Car04g00570 259 MobiDBLite consensus disorder prediction 85 106 - -
Car04g00570 259 MobiDBLite consensus disorder prediction 191 236 - -
Car04g00570 259 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 3 252 - -
Car04g00570 259 SMART rrm1_1 8 78 IPR000504 GO:0003723
Car04g00570 259 SMART rrm1_1 112 181 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00570 Car-Chr4 5697347 5705352 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00570 1 169 Eukaryotic Initiation Factors Gene Family AT1G71770 25.287 6.02e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00570 K12890 - gmx:100794282 354.755