Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00568 ATGGATGATATTTTCATGTCATCACTGAACTATGCCACTCAACAACACTTAAATATATCATCATCTTCTTCTTCTTCCGAAACAAGTTATTCTACAAACCGTACAAGTAGTAATGAAGAAGTTATATTAGCATCAACACGACCAAAGAAACGAGCAGGGAGAAGAGTGTTCAAGGAGACAAGACATCCTATTTACAGAGGAGTAAGAGCAAGGGACAATAACAAATGGGTTTGTGAGATGCGTGTTCCTAATAATAACAAATCAAGGATTTGGCTTGGAACATATCCAACACCTGAAATGGCTGCACGTGCACATGATGTTGCTGCACTCACTCTTCGTGGGAAATCAGCTTGTCTTAATTTTGCTGACTCAGCATGGCGGTTGAGGTTGCCGGAAACTACTGACGCGGTGGAGATAAGAAGAGCGGCGATGGAAGCTGCTCAGTTGTTTGTGGTTGAAGACAAACAATGTGAACAACAGAGTGTTGGGGAAGAACAAGTTGTTCCGGTGGTGACGTCAGAATATGATGAAGAAATGAATGATTTGATTTTGAGTATTGCGAATGAGCCATTACGTTCTCCTCCTCCTTCTATGACAGATTATTATGGTGTACATGGGGCCCTCATTTCATTAGCATGGACATATAATCATAAAGCACGTTCTCCATGTGAACTATCCAGTGCGCAGTTTTCTTCTGATTATCGATTGGCAGCTTTTGCGTATGTGAATCTAGTAATTGACACAAATTCAAAAACTTTATTTTTCCAAGAATCGATTATGAGAGGTTCAAAGCGTTTGGCTGTTTCCGAACTCAATCATATTGATACTAACGAAACGCCCAGGGTCAAAGGATGCATAAAGCATGTGGAGAGAGTGAAGAGAATCCAAATCCAGCACACCATTAATACACGAGGCTTCTACGGTTCTCATAATAGACCATGTTAA 945 0.4063 MDDIFMSSLNYATQQHLNISSSSSSSETSYSTNRTSSNEEVILASTRPKKRAGRRVFKETRHPIYRGVRARDNNKWVCEMRVPNNNKSRIWLGTYPTPEMAARAHDVAALTLRGKSACLNFADSAWRLRLPETTDAVEIRRAAMEAAQLFVVEDKQCEQQSVGEEQVVPVVTSEYDEEMNDLILSIANEPLRSPPPSMTDYYGVHGALISLAWTYNHKARSPCELSSAQFSSDYRLAAFAYVNLVIDTNSKTLFFQESIMRGSKRLAVSELNHIDTNETPRVKGCIKHVERVKRIQIQHTINTRGFYGSHNRPC 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00568 314 ProSiteProfiles AP2/ERF domain profile. 64 122 IPR001471 GO:0003700|GO:0006355
Car04g00568 314 Pfam AP2 domain 63 114 IPR001471 GO:0003700|GO:0006355
Car04g00568 314 SMART rav1_2 64 128 IPR001471 GO:0003700|GO:0006355
Car04g00568 314 MobiDBLite consensus disorder prediction 17 41 - -
Car04g00568 314 CDD AP2 63 124 IPR001471 GO:0003700|GO:0006355
Car04g00568 314 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Car04g00568 314 PRINTS Ethylene responsive element binding protein signature 88 104 IPR001471 GO:0003700|GO:0006355
Car04g00568 314 SUPERFAMILY DNA-binding domain 64 124 IPR016177 GO:0003677
Car04g00568 314 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3 204 - -
Car04g00568 314 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 3 204 IPR045277 GO:0003700
Car04g00568 314 Gene3D AP2/ERF domain 64 123 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00568 Car-Chr4 5676061 5680841 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00568 38 200 AP2-EREBP Transcription Factor Family AT1G63030 56.024 7.64e-57 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car04g00568 AP2 3.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00568 - - mtr:MTR_5g010940 261.922