Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00561 ATGGATCCCAACAGCAAATCTTCGGAACAAGTCATTTCAGAAATGGTTGAAATGGGTTTTGAGCGTTTCAAAATTCTCGAAGCCATAAAAGTAGTGGGCACATCGATTCCCAACGTTGTAGAACATATCTTCAATACTAGTAGTTGCAGTAACCCTGAACCACCCACTACCCACATCTCAAAATCATGTTCAAGTAATGGGAAAATCCTAAAAAAACGAACTTTATCATCTTCCGTTCAAGTTCCGAAGTCGAGAACAATTAACCATTATTTCCAATCCACTGATAGAGCTGCAGAGAAAAAGAAAAatgttgttgttgttgatgatgatgatgatgaagaggaagaGTACAAGAAGCATTTACCTCAAATGGAATTTGATATTGATTCTGATATTACATCTGATTGGGAGCAGAGAGCTAGCACTCTATTGCAAAAGCATTTTGGTTTTTCATCGTTGAAAAGTTTTCAGAAGGAAGCTCTATCTGCCTGGTTTGCTCACAGAGACTGTCTTGTCCTGGCTGCAACTGGATCTGGGAAATCTCTGTGCTTTCAGATTCCTGCATTGCTAACTGGGAAAGTGGTGGTTGTGATTTCGCCTTTAATAAGCCTAATGCATGATCAATGCTTGAAGCTAACAAAACATGGAATCAGTGCTTGCTTTCTTGGCTCAGGGCAGCCTGATAATACTGTTGAAAATAAAGCAATGAGAGGCATGTATAGTATTGTGTATGTTTGTCCAGAGACAGTCCAAAGATTGATTCAACCTCTTCAAAAGCTTGCAGAAAGCCGTGGTATTGCTTTGTTCGCAATTGATGAGGTACACTGTGTTTCTAAATGGGGACATGATTTCCGTCCAGCTTACAGGCGACTGTCTGCATTGAGGGAAAACTTCACTACTAGCAAGCTAAAATCCCTGAAAATTGATATACCTATAATGGCGTTGACAGCTACAGCTACAAAGAGAGTTCGAGAAGACATTTTAAAATCGCTTTGCTTATCAAAAGATACACATGTTGTTCTCACATCATTTTTTCGACCTAATTTGCGCTTCACGGTAAAGCATAGTAGAACATCATGGGCTTCTTATGAGACAGATTTTCATGAATTGATTAAAGAATATGGCGGAAATAATAAAAATGGTGGAAATAAAAAAGCTTTCACTTTAGATGATGTCTCCATTAACTCTGATGCTGGTAGAATGTCTGACACAGacagtgtttcttcttatgatgtggacgacaaccaagatgactatgatgacagcgatACTAATGTAAAGCAATCAGGAAACATCGACAATCATAAAAAAAGAAAAAAATTGACAATCGAGTTCCTGGAAAATGATGTTGATGTCTTTCAAAGTGCGGATGACTTGGATGTTACCTGTGGTGAATTTTGTGTACAATCTCCTCCCAAGCAATGTGAGTTATCTGATACAATTGATCCGCCTACAAGACCAGAAAAAAGACTCAAAATGCTTAAGGAGCCTTTGGACCAAGGACCAACAATCATATACGTACCAACCAGAAAAGAGACGGTGAGAATTGCAAAGTATCTTTGCAAGTTTGGTGTGAAGGCTGCTGCTTATAATGCCGGGCTGCCCAAGTTGCATCTAAGGAAGACTCACAAAGAGTTTCATGAAAATACTTTAGAGGTTGTTGTTGCAACAATAGCGTTTGGAATGGGAATTGACAAATCAAATGTTAGAAAAATCATCCACTATGGTTGGCCGCAGAGTTTGGAAGCCTACTACCAAGAAGCTGGGCGGGCTGGTCGAGATGGGAAGTTAGCAGATTGCATTCTATATGCAAACCTAGCGAGGAAGCCATCACTTTTGCCGAGTCGTAGAAGCGAAGATATGACAAAGCAAGCATATATCATGTTATCTGATTGTTTCAGATATGGAATGAATACTTCATGTTGTCGAGCAAAGACACTTGTAGAATACTTCGGAGAGGATTTCAGGCATCAGAAATGTCTCTTATGCGATGTGTGCGTTAATGGACCACCTCAAAGGCAGAATCTAAAAGAGGAGGCCTGTATTTTACTGCAAACTATAGGGGCTCATAATGCATGTAGATATTCCATGGATTCCTCATATAACGATGATATCCATTTCGATTCCAAGGATAGAAGACTAGGGCTAGGGCTTAGGCCAAGTCTTATGATGTTAGTTAGAAGTATAAGGGAGCAGTTTCAAAAGTTTTTAACCACTGATATATTGTGGTGGAGAGGCCTTGCTCGAATTTTGGAAGCTAAAGGATATATCAGGGAAGGTGATAACAAGACCAATGTTCAAATAAAATACCCAGAACTAACAGAACTGGGTTTGGAATTTGTGAAGTCCATGAGTGAGCAAACTTTCTATGTTTACCCTGAGGCAGATATGTTGCTTGAAACAAAAACTGACAAACCATTTTCCTCATTCTCAGAATGGGGAAAAGGTTGGGCTGATCCTGAGATCCGACGCCAGCGCCTAGAAAGCAATAGAAGTCCAACGATGCGACGGAGCACTAGAAAGCAAAGAAAGAGTAAAGGTAAAAAAGTGAAACGTGATTTGAGGACTTCTCGAGGTAGACTAGCAGCAAAACTCTCGAAACATAAGTGA 2610 0.3847 MDPNSKSSEQVISEMVEMGFERFKILEAIKVVGTSIPNVVEHIFNTSSCSNPEPPTTHISKSCSSNGKILKKRTLSSSVQVPKSRTINHYFQSTDRAAEKKKNVVVVDDDDDEEEEYKKHLPQMEFDIDSDITSDWEQRASTLLQKHFGFSSLKSFQKEALSAWFAHRDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCLKLTKHGISACFLGSGQPDNTVENKAMRGMYSIVYVCPETVQRLIQPLQKLAESRGIALFAIDEVHCVSKWGHDFRPAYRRLSALRENFTTSKLKSLKIDIPIMALTATATKRVREDILKSLCLSKDTHVVLTSFFRPNLRFTVKHSRTSWASYETDFHELIKEYGGNNKNGGNKKAFTLDDVSINSDAGRMSDTDSVSSYDVDDNQDDYDDSDTNVKQSGNIDNHKKRKKLTIEFLENDVDVFQSADDLDVTCGEFCVQSPPKQCELSDTIDPPTRPEKRLKMLKEPLDQGPTIIYVPTRKETVRIAKYLCKFGVKAAAYNAGLPKLHLRKTHKEFHENTLEVVVATIAFGMGIDKSNVRKIIHYGWPQSLEAYYQEAGRAGRDGKLADCILYANLARKPSLLPSRRSEDMTKQAYIMLSDCFRYGMNTSCCRAKTLVEYFGEDFRHQKCLLCDVCVNGPPQRQNLKEEACILLQTIGAHNACRYSMDSSYNDDIHFDSKDRRLGLGLRPSLMMLVRSIREQFQKFLTTDILWWRGLARILEAKGYIREGDNKTNVQIKYPELTELGLEFVKSMSEQTFYVYPEADMLLETKTDKPFSSFSEWGKGWADPEIRRQRLESNRSPTMRRSTRKQRKSKGKKVKRDLRTSRGRLAAKLSKHK 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00561 869 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 161 337 IPR014001 -
Car04g00561 869 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE SIM 3 857 - -
Car04g00561 869 MobiDBLite consensus disorder prediction 836 869 - -
Car04g00561 869 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 486 648 IPR001650 -
Car04g00561 869 MobiDBLite consensus disorder prediction 398 431 - -
Car04g00561 869 Gene3D - 3 49 - -
Car04g00561 869 Pfam DEAD/DEAH box helicase 156 324 IPR011545 GO:0003676|GO:0005524
Car04g00561 869 Gene3D - 107 345 IPR027417 -
Car04g00561 869 Gene3D - 609 792 IPR036388 -
Car04g00561 869 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 605 IPR027417 -
Car04g00561 869 Pfam Helicase conserved C-terminal domain 490 594 IPR001650 -
Car04g00561 869 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 6 46 IPR015940 -
Car04g00561 869 Gene3D - 479 604 IPR027417 -
Car04g00561 869 SMART helicmild6 514 595 IPR001650 -
Car04g00561 869 Pfam RecQ zinc-binding 618 666 IPR032284 -
Car04g00561 869 MobiDBLite consensus disorder prediction 824 869 - -
Car04g00561 869 PANTHER DNA HELICASE RECQ FAMILY MEMBER 3 857 - -
Car04g00561 869 SMART ultradead3 149 354 IPR014001 -
Car04g00561 869 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 143 372 IPR004589 GO:0004386|GO:0006310
Car04g00561 869 CDD DEXHc_RecQ 144 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00561 Car-Chr4 5618741 5624362 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00561 489 613 Eukaryotic Initiation Factors Gene Family AT5G11170 27.200 1.97e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00561 K10900 - gmx:100793222 1189.48