Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00558 ATGGTGGAAACAAACGAAAACACACAGAAAGAAACCGTACGCGAATACATAGAAGCAGAAGGCGAGGACCGAAGTTTCGAAGAACTTGGGTTAGATGCACGCCTAGTTCGTGCCTTATTGAAGAAAAGAATCGAAAAACCTACTCCAATTCAACACGTCGCGATTCCATTGATTCTGGAAGGTAAAGACGTTGTTGCTCGAGCAAAAACCGGTTCTGGGAAAACTCTTGCGTACCTTCTACCATTGCTTCAGAAACTGTTTACTGCTAATCCTGATAGGAAGAAGCTAGCCCCTAATGTTTTTATTCTTGCTCCATCTCGTGAACTCTGTCAACAGATATACGTGGAAGTCAAGTCACTTCTCGAATTATGCAGAGTTCAGCTGAAAGTTGTGCAATTGAATAGCAATATGCTTGCCACTGACTTGAAAGCAGCACTGGTTGGACCTCCTGATGTTTTGATCTCCACTCCTGCTTGCATAGCTAAGTGTTTGTCTGACTCAATACTTCAGGCGGCATCCATTAGTGGTTCCCTTGAAACTCTAGTTCTCGATGAGGCAGATCTTCTGTTATCATATGGGTATGAAAATGACATAAAAGCTTTAACACCTCACATACCCAGAAGTTGCCAGTGTCTTCTTATGTCTGCAACATCAAGTGCTGATGTTGACAAACTAAAAAAGTTGATTTTACACAACCCCTTTATTTTGACTTTGCCCGAAGTGGGAAATCGTAAGGACGATGTCATCCCTAAAAATGTTCAGCAGTTCTCGATCTCATGTCCTGCCGCCGATAAGTTGCTCTACATCCTTGCTATGTTAAAGTTGGAGTTGGTTCAAAAGAAAGTTTTGATATTCACTAATACCATAGACATGAGTTTCAGATTGAAACTATTTTTGGAAaagTTTGGGATCAAGTCTGCTGTTTTAAATGCTGAATTGCCTCAGAATTCCCGTCTCCATATTCTTGAGGAATTCAATGCCGGCCTATTTGATTATCTAATTGCAACAGATATCAGCCAGTCAAAGGAAAAGGAAGAGGCGCCTAAGGAAAATAATGTTGGATCACGGAAGTCTAGAAAACATGCAAAGCTAAAATTAGATTCTGAATTTGGAGTAGTTAGGGGAATTGACTTTAAAAATGTTTACACGGTAATAAACTTTGAAATGCCTCACAATGTTGCAGGATACGTACATCGAATTGGTCGTACTGGAAGAGCATATAGTTCTGGTGCTTCTATCTCCTTGGTTTCTTCAGATGAGATGGATACCTTTGAAGATATAAGATCTTTTGTTGGAGACGATGAAAACAATGGCTCAAACTCAATTTCCGAGTTTCCCTTACTCACCAAGAATGCAGTTGAATCTTTACGATATAGGGCTGAGGATGTTGCAAAGAGTATAACTAAAATTGCTGTCCGAGAATCACGAGCCCAAGATTTGAGGAATGAAATTTTGAACTCTGAAAAGCTGAAGGCCCACTTTGAAAGCAATCCAAGAGATCTAGATCTATTGAAACACGACAAAGTTTTGAGCAAGAGTGCCCCTCCAACACACCTTCGGGATGTCCCAGACTACTTAATAGACAAAACAACAAAAGAGGCCAGGGCAATGGTTAAGCTTACAAGAGATGCAATGGGAAATAATAATCGCCGAAGGTTATCTAAGAGAAAAGCAAAAAAAGGTGGTGACCCTCTGATGGCTATCTCTGCTGGGGTATCAAAAAGACCGCACAAAGCTTTTAAAAAGGCTGGTGCAAGCAACGGCAacagcagagatagacagacacacaaaaagacagaagaTGCATTTTGA 1812 0.3985 MVETNENTQKETVREYIEAEGEDRSFEELGLDARLVRALLKKRIEKPTPIQHVAIPLILEGKDVVARAKTGSGKTLAYLLPLLQKLFTANPDRKKLAPNVFILAPSRELCQQIYVEVKSLLELCRVQLKVVQLNSNMLATDLKAALVGPPDVLISTPACIAKCLSDSILQAASISGSLETLVLDEADLLLSYGYENDIKALTPHIPRSCQCLLMSATSSADVDKLKKLILHNPFILTLPEVGNRKDDVIPKNVQQFSISCPAADKLLYILAMLKLELVQKKVLIFTNTIDMSFRLKLFLEKFGIKSAVLNAELPQNSRLHILEEFNAGLFDYLIATDISQSKEKEEAPKENNVGSRKSRKHAKLKLDSEFGVVRGIDFKNVYTVINFEMPHNVAGYVHRIGRTGRAYSSGASISLVSSDEMDTFEDIRSFVGDDENNGSNSISEFPLLTKNAVESLRYRAEDVAKSITKIAVRESRAQDLRNEILNSEKLKAHFESNPRDLDLLKHDKVLSKSAPPTHLRDVPDYLIDKTTKEARAMVKLTRDAMGNNNRRRLSKRKAKKGGDPLMAISAGVSKRPHKAFKKAGASNGNSRDRQTHKKTEDAF 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00558 603 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 237 IPR027417 -
Car04g00558 603 MobiDBLite consensus disorder prediction 544 603 - -
Car04g00558 603 Pfam DEAD/DEAH box helicase 48 225 IPR011545 GO:0003676|GO:0005524
Car04g00558 603 PANTHER ATP-DEPENDENT RNA HELICASE DDX56-RELATED 17 547 - -
Car04g00558 603 CDD SF2_C_DEAD 253 416 - -
Car04g00558 603 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 55 236 IPR014001 -
Car04g00558 603 Coils Coil 477 497 - -
Car04g00558 603 SMART helicmild6 293 407 IPR001650 -
Car04g00558 603 Gene3D - 1 238 IPR027417 -
Car04g00558 603 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 24 52 IPR014014 GO:0003724
Car04g00558 603 SMART ultradead3 43 256 IPR014001 -
Car04g00558 603 Gene3D - 241 445 IPR027417 -
Car04g00558 603 PANTHER RNA HELICASE 17 547 - -
Car04g00558 603 Pfam Helicase conserved C-terminal domain 264 407 IPR001650 -
Car04g00558 603 CDD DEADc_DDX56 31 238 - -
Car04g00558 603 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 248 432 IPR027417 -
Car04g00558 603 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 272 453 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00558 Car-Chr4 5591738 5599033 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00558 25 447 Eukaryotic Initiation Factors Gene Family AT3G19760 25.532 3.89e-37 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00558 K14810 - gmx:100800749 992.26