Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00557 ATGGATCAACCGCGATCGAACAACATCGATGAGAATGTAGGGATTCCAGACGATTTACGCTGCAAGAGGTCAGATGGCAAGCAATGGAGATGCACAGCTTTGTCGATGCCAGATAAGACAGTGTGTGAGAAGCACTACATTCAAGCTAAGAAGAGAGCAGCGAATTCCGCCATGAGAGCTAACCTTAAAAAAGCTAAGAGTGATGATTTCGATGCTCCACTTTCTACTACTTTTAATAATCACCGTTCTTCTTCTTCCTCTGGGAAGAAGTTCTTTGATAAAGTTTCTAAGAATCAGTTTCGTTATACTCCCGAGGGTGCTGCCTCTGCACGTCATGCTTCCAATCATGGTGATGGTGACGATTCTCCTGATGGCgttgacgtggatgttgatgttgacgatgatgCCCCTCTCTATGAAGAGAATTGGGTCTCCGATGATTCGCCTGTTTCTGGCGATGATTCTGCTAAGAAAGCGTCGCACATGAGCCTCGATCCCAATGCTACTACTGAATGTTCTGATGGAACGTCAGATTCTTCTCAAGACACCGGAGGGCAGACTTGCCATCAGTGCAGGAGGAGTTATCGAAATAGAGTTACTTGGTGCCTTAGGTGTGATAGGAGAGGATACTGTGATAACTGTATATCAACATGGTATTCTGACATTTCGTTGGATGAACATCAGAAGACATGTCCTGCATGTCGTGGTATATGTAATTGTAAAATTTGCTTACGCAGTGATAATTCAATAAAGGTTCGGATACGTGAGATACCTGTACTGGATAAGTTACAGTATCTTCACTTGCTGCTCTCGTCGGTGCTTCCCGTGGTAAAGCAGATCCATCGTGAACAATGTTTTGAAGTTGAACTTGAAAAGAAGTTGCGTGGGGCTGAAATAGATCTTCCGAGGACAAAATTGAATGCAGATGAACAAATGTGCTGCAATTTATGTAGGATACCCATCACTGATTATCACCGACGCTGTCCAAGTTGTTCATATGATTTGTGCCTTATTTGTTGTCGAGATCTTCGGGAAGCTACTGTACATCAGAGTAAAGAACCTCAACTAGAGCAAGCAAAAAATACTGATCGAAACATATTAAGTAAGTTCCCTCATTGGAGATCTAATGATAATGGAAGTATTCCATGCCCCCCTAAGGAGTATGGTGGTTGTGGTTTTTCATCATTAAATTTAAGTCGAATTTTCAAGATGAATTGGGTTGCAAAATTGGTAAAAAATGTGGAGGAAATGGTTAGTGGATGCAGAATGAGTGACGCTGATGGTCCACCAGAAACCGAGTTGAATGCTCTCAGACTTTGCCAATATTCTCAAAGAGAGGCTAGCAATGATAATCATCTTTATAATCCAACATCTGAAGATCTCAAAACCGATGGGATTGGCATGTTTAGAATGCACTGGAAAACTGGTGAACCCATTATTGTGAAGCAAGTATTTGAAAGGTCATCCATTTCAAGCTGGGACCCATTGGTCATATGGAGAGGGATTCTAGAGACAACGGATGAGAAGATAAAAAATGATAACAGAACGGTTAAGGCCATAGATTGCTTAGATGGATCTGAGATTGATATTGAGCTCGGTCAGTTCATGAAAGGATATTCTGAGGGGTGTTTTCATGAAAATGGTTGGCCACAATTATTGAAGCTGAAGGATTGGCCTTCACCCAGTGCATCTGAAGAATTTCTTTTGTACCAAAGACCCGAATTTATCAGCAAACTGCCTTTACTTCAGTATATTCACTCCAAGTGGGGCCTTCTTAATGTTGCAGCTAAATTGCCTCATTACTCCTTGCAAAATGATGTAGGACCCAAGATCTATATATCTTATGGGATTAGTGATGAACTTGGCAGAGGTGATTCTGTGACAAAACTCCACTTCAATATGCGTGACATGGTTTACCTTTTGGTCCATACaagtgaagtgaagttgaaggattggcagagaactgaagttgaaatgaTGCAAAAAACTTATAAGGAATCTGAGGCGAAAGAATCTCACGGGGATCCACAAATATGTTCTAAAGGGAGTTCACTTGATTCATCCCTTTGTACAAAAATTAATGGACTAGATTTGGAATCAGATCAGAAAGATTTTACTATGGATCAAGGATTTGAAATTTATTCTGGCGCAGACGGGAATATGGTCAATTGTGACCTTCCATTAAGACAAAATGGAGACGACTCTGAGAAAACACATCCTGGAGTTCTTTGGGATGTCTTTCGTCGGAAGGATGTTTCAAAGGTGACTGAATATTTGAAAATGCATTGGAAGGAATTTGAGAAGTCAGATGATACAGTAAGTGAATTTGTTACATGGCCTCTTTATGATGGAGCTATTTTTCTTGACAGACACCATAAAAGAAAGTTGAAGGAAGAATTTGTAGGAGTGGAGCCGTGGTCATTTGAACAGAATTTGGGGGAAGCTATATTTGTTCCTGCTGGGTGCCCTTTTCAAGCAAGAAATGTTCAGTCCACTGTTCAGTTGGGCCTTGATTTCTTGTCTCCTGAAAGCCTGGGGGAAGCTGTAAGATTGGCAGAGGAAGTTCGCTGTCTACCTAATGAACATGAAGCAAAACATCAAGTTTTGGAGGTTGGGAAGATATCTCTTTATGCAGCAAGTTCAGCAATCAAAGAAGTTCAGAAACTCGTTCTTGACCCGAAACTTGGCGGAGAGATCGGATATGGAGACCCTAATTTGACTGCAATGGTTTCTGAGAATTATGAGAAGATGTCTAAGCGGAGGCAGATTACTTGTGCTTGA 2781 0.4017 MDQPRSNNIDENVGIPDDLRCKRSDGKQWRCTALSMPDKTVCEKHYIQAKKRAANSAMRANLKKAKSDDFDAPLSTTFNNHRSSSSSGKKFFDKVSKNQFRYTPEGAASARHASNHGDGDDSPDGVDVDVDVDDDAPLYEENWVSDDSPVSGDDSAKKASHMSLDPNATTECSDGTSDSSQDTGGQTCHQCRRSYRNRVTWCLRCDRRGYCDNCISTWYSDISLDEHQKTCPACRGICNCKICLRSDNSIKVRIREIPVLDKLQYLHLLLSSVLPVVKQIHREQCFEVELEKKLRGAEIDLPRTKLNADEQMCCNLCRIPITDYHRRCPSCSYDLCLICCRDLREATVHQSKEPQLEQAKNTDRNILSKFPHWRSNDNGSIPCPPKEYGGCGFSSLNLSRIFKMNWVAKLVKNVEEMVSGCRMSDADGPPETELNALRLCQYSQREASNDNHLYNPTSEDLKTDGIGMFRMHWKTGEPIIVKQVFERSSISSWDPLVIWRGILETTDEKIKNDNRTVKAIDCLDGSEIDIELGQFMKGYSEGCFHENGWPQLLKLKDWPSPSASEEFLLYQRPEFISKLPLLQYIHSKWGLLNVAAKLPHYSLQNDVGPKIYISYGISDELGRGDSVTKLHFNMRDMVYLLVHTSEVKLKDWQRTEVEMMQKTYKESEAKESHGDPQICSKGSSLDSSLCTKINGLDLESDQKDFTMDQGFEIYSGADGNMVNCDLPLRQNGDDSEKTHPGVLWDVFRRKDVSKVTEYLKMHWKEFEKSDDTVSEFVTWPLYDGAIFLDRHHKRKLKEEFVGVEPWSFEQNLGEAIFVPAGCPFQARNVQSTVQLGLDFLSPESLGEAVRLAEEVRCLPNEHEAKHQVLEVGKISLYAASSAIKEVQKLVLDPKLGGEIGYGDPNLTAMVSENYEKMSKRRQITCA 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00557 926 ProSiteProfiles JmjC domain profile. 561 856 IPR003347 -
Car04g00557 926 SUPERFAMILY Clavaminate synthase-like 470 864 - -
Car04g00557 926 ProSiteProfiles WRC domain profile. 15 59 IPR014977 -
Car04g00557 926 Pfam JmjC domain, hydroxylase 742 835 IPR003347 -
Car04g00557 926 Pfam WRC 16 56 IPR014977 -
Car04g00557 926 Gene3D Cupin 449 865 - -
Car04g00557 926 ProSiteProfiles Zinc finger RING-type profile. 188 235 IPR001841 -
Car04g00557 926 PANTHER JMJC DOMAIN PROTEIN JMJ24 8 915 - -
Car04g00557 926 SMART cupin_9 568 856 IPR003347 -
Car04g00557 926 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 8 915 IPR045109 GO:0032454|GO:0033169
Car04g00557 926 MobiDBLite consensus disorder prediction 106 188 - -
Car04g00557 926 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 183 248 IPR018866 -
Car04g00557 926 MobiDBLite consensus disorder prediction 124 141 - -
Car04g00557 926 MobiDBLite consensus disorder prediction 65 90 - -
Car04g00557 926 MobiDBLite consensus disorder prediction 162 188 - -
Car04g00557 926 MobiDBLite consensus disorder prediction 72 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00557 Car-Chr4 5579898 5586823 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00557 16 56 GRF Transcription Factor Family AT3G13960 46.341 2.98e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Car04g00557 JmjC 1.4e-05 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00557 K15601 - gmx:100801287 1464.51