Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00555 ATGTCAAACATTACAAGTTGTGATAGTGGGAGCTTGTCAACAGAGAATAACAGAGATGTTGCAGTTAAACAGAAACCAATAGAAATAGTTGGTCAGTTTCATAGTCCACATTCTCATACTTCAACAACAACTACAAATAATAATAGCAACGGTTCCAACACAATTTTACAACCACCTCTTAAGAAGAAAAGGAACCTACCAGGAAATCCAGATCCAAGTGCTGAAGTGATAGCTCTATCACCAACAACACTAATGGCAACAAACAGGTTCGTATGTGAAATATGCAACAAAGGGTTTCAAAGAGATCAAAACCTTCAACTGCATCGAAGAGGTCACAATTTGCCTTGGAAGCTTAAACAGAGAACTACAACAGAAATACGAAAGAGGGTTTATGTTTGCCCTGAACCTTCATGTGTTCATCACAATCCAGCAAGAGCCCTTGGTGATCTTACTGGCATTAAAAAGCACTTTTGTAGAAAGCACGGTGAGAAGAAGTGGAAATGTGATAAGTGTTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCATTCCAAAATCTGTGGTACAAAGGAATACAAGTGTGACTGTGGAACCATATTTTCCAGAAGAGATAGTTTCATTACACACAGAGCATTTTGTGACGCATTAGCTGAAGAAAACAACAAAGCCAACGAAGGAGGATCAATACAATTAATATCATCAAGCTTGCAATGCCAACAACCAATCCTTCCCTCACACCAAATTGGTAATGTAACTTCATCATCACAATTGATCAACCGTTCAATCTCAGATGATGATCACAAACATCCACTATCATCATCATCACTACCTCATCATGACCTCATATCAAAACCATTCATGAACAACAACAACATTACTGGAGGAGGATCGATATTCAGTCGAAGCCTTTCTTCATCTCCTTCACTTCAACTAAGTTCAAACTCTCTCAACAACATCTTTGAAGAAAATGGTCTTCATTTATCTGCTGCAACTTCACCTCACATGTCAGCCACTGCATTGTTACAAAAAGCTGCTCAAATGGGTGCAACCGTGAGTAGTAATAGTACTATGACAGATCATAAAACCGTTGCAAATAACATGGCAGCGCCACTATTTGGTGTGGTGCAACAACAAGGACATGGTTTCATGAACCATTACATGCAAAGTACTAGCCAACAACCTCATCAGTACAATAATAATAGTTTTATGAATGGAAATGGGATATTAAGTGGAGGTGTTGGAATGAATGGAGTTGATATGTTTAATGCTATATTGGACCAAAGTAAGGCATTATCAAAGATCATAGAACAGAATAATCAAAGTCAAAGCAATAGTGTTGGAGTTGGAGGAGGAGGAAGTAATAATAATAATAATGTTATCAACATTGGTGGAAGTAAGGGAAGTGGAGATGTTATGACACTGGACTTGTTGGGGATAGGAGGTGGTGCACATAGTAATTTCTATGGAGGAGGAGGTGCACAACAGCAACAAGCAGCAGAAAGTGCTGCGGCAGCAGATGAAGTTTGGAGAAATTGGTCAACCAAGAATGGAGGCTTTGAATCCTTTTCGGCAACAAGCAACATTAATTGA 1593 0.3873 MSNITSCDSGSLSTENNRDVAVKQKPIEIVGQFHSPHSHTSTTTTNNNSNGSNTILQPPLKKKRNLPGNPDPSAEVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTTTEIRKRVYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTKEYKCDCGTIFSRRDSFITHRAFCDALAEENNKANEGGSIQLISSSLQCQQPILPSHQIGNVTSSSQLINRSISDDDHKHPLSSSSLPHHDLISKPFMNNNNITGGGSIFSRSLSSSPSLQLSSNSLNNIFEENGLHLSAATSPHMSATALLQKAAQMGATVSSNSTMTDHKTVANNMAAPLFGVVQQQGHGFMNHYMQSTSQQPHQYNNNSFMNGNGILSGGVGMNGVDMFNAILDQSKALSKIIEQNNQSQSNSVGVGGGGSNNNNNVINIGGSKGSGDVMTLDLLGIGGGAHSNFYGGGGAQQQQAAESAAAADEVWRNWSTKNGGFESFSATSNIN 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00555 530 Pfam Zinc finger, C2H2 type 90 112 IPR013087 -
Car04g00555 530 Gene3D Classic Zinc Finger 69 135 - -
Car04g00555 530 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 112 IPR013087 -
Car04g00555 530 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 30 505 - -
Car04g00555 530 SUPERFAMILY beta-beta-alpha zinc fingers 89 186 IPR036236 -
Car04g00555 530 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Car04g00555 530 MobiDBLite consensus disorder prediction 33 71 - -
Car04g00555 530 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 30 505 - -
Car04g00555 530 MobiDBLite consensus disorder prediction 34 59 - -
Car04g00555 530 Gene3D Classic Zinc Finger 145 224 - -
Car04g00555 530 SMART c2h2final6 90 112 IPR013087 -
Car04g00555 530 SMART c2h2final6 131 161 IPR013087 -
Car04g00555 530 SMART c2h2final6 166 186 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00555 Car-Chr4 5572433 5576946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00555 61 358 IDZ Gene Family AT5G66730 54.324 2.12e-117 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car04g00555 zf-C2H2 0.0054 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00555 - - gmx:100813556 602.823