Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00554 ATGAAGAGTGGTGATGGAGAAAAAACATTGCCTATAGCAAATGTGGGTCGAATAATGAAGCAAAATCTTCCTCCAAATGCAAAGATCTCAAAAGAAAGTAAAGAACTAATGCAAGAAAGTGTGACAGAGTTTATAAGTTTCGTGACAGGTGAAGCATCTGAGAAGTGTCAAAAGGAGAATCGAAAGAGCGTTAATGGAGATGATATCTGTTGGGCTTTGTGTTCTTTAGGGTTTGACAACTATGCTGAAGCCATTGGAAAGTACTTGTATAAATACAGACAAGCTCAAATTAATACACAAGATAAGATTCAATGA 315 0.3619 MKSGDGEKTLPIANVGRIMKQNLPPNAKISKESKELMQESVTEFISFVTGEASEKCQKENRKSVNGDDICWALCSLGFDNYAEAIGKYLYKYRQAQINTQDKIQ 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00554 104 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-4 2 99 - -
Car04g00554 104 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 2 99 IPR027113 GO:0001228|GO:0006355|GO:0016602
Car04g00554 104 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 9 73 IPR003958 -
Car04g00554 104 SUPERFAMILY Histone-fold 8 99 IPR009072 GO:0046982
Car04g00554 104 Gene3D Histone, subunit A 2 104 IPR009072 GO:0046982
Car04g00554 104 PRINTS CCAAT-binding transcription factor subunit A signature 37 55 - -
Car04g00554 104 PRINTS CCAAT-binding transcription factor subunit A signature 56 74 - -
Car04g00554 104 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00554 Car-Chr4 5555240 5555598 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00554 5 96 CCAAT-HAP3 Transcription Factor Family AT1G09030 69.565 1.16e-46 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Car04g00554 CBFD_NFYB_HMF 9.5e-25 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00554 K08065 - gmx:100815151 156.377