Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00550 ATGATTCATAACTGCCTTAGTTTTTCCAAAGAAGAGAAAAGCAACCGTCACCAAGTTAAAGGGACTGTCGTGCTGATGAAAAAGAATGTCTTGGATTTCAATGACTCCATTGCTTCATTCCGTGATGATATTCGTGAGTTTTGGGGCAAAAAAGTTTCTCTTCGGCTAATAAGCGCTGTTAATGCTGATCCGAATAATGGATTGAAGGGAAAACTTGGAAAGCCTGCTAATATAGAACATTGGAGTACAATTAGAGCAACagcaggagaatcaacattacaggtttcatttgattgggatgaagagataggaacacctggagcagttttaataaggaataaccattactctgaattttacctcaaaaccttgacacttaatggagttccgggacaacatggcgatattcattttatctgcaactcttggatttatcctgttgaaaaatatgaaaaagatcgcattttcttctccaacaagccatttcttccaagtggaacaccaagtccactacttaggtacagagaagaagaactaaagagtttaagaggtgatggaaannnnnnnnnnnnnnnnnnnnnnnnnnaaatttatgattatgcatgctacaatgatttgggaaataaagataaagttcaagaccatgctcgtccaattttaggaggttctaccgaatatccctaccctcgtagagccagaacgggtagaaaacctgcaaaagatcctaattatgagagtaggctgaaaattgaaaatagcttaaagatctatgttccgagggatgaaaaatttgaacacttgaaaatgtcagattttcttgcttatgcgctgaaatccatagttcaagttctcaaacctgaactggaatctatatttgatagcactcccaatgagtttgacagttttgatgatgtacataaactctattacggtgggattaaggtgcctcagagtatacttaagggtgttagggataacatccatggagaaatgtttaaggaaattctacgaactgatggagaaaatttcctcaaatttcccctacctcaagtgattgcagcggataaatctgcatggagaactgatgaagaatttgctcgggagatgttggctggtgtaaacccggtcataatatgttgtctacaaaaattcccaccatcaagcaagctagatcataaagtctatggtgatcaatccagtaaaataaccaaagaagaccttgacattaatttgaatggactcaccgtggataaggcaataagagaaaagaggttgttcatattagatcaccatgatacattgatgccatacctaaggaggattaactccacctctacaaagacatatgctagcagaacaattttgttcttgcaagataatggaacattaaagccactagccattgagttgagtttgccacattctgatggagatcaatatggtgcaattagtgaagttcacttaccagttgaggaaggtgttaaaaagtttatttggcaattagccaaagcgtatgtcggagtagttgactcaggctatcatcaacttatcagtcactggttgcatactcatgctgttgttgagccattcatcatagcttcaaataggcaacttagcatgcttcaccctattcataagctattgcatcctcactttcgtgacaccatgaatataaatggacttgcaagacaaatcctcatcaatgcaggtggtgctctagagtcaacagtttttccatcaaaattttctatggagttttcatcatttctttataaggattggtgtttccccgaacaatcacttcctgaagatcttgtcaagcgaggaatggctattagggactcaagttccccgcacggtcttcgattattgatcgaagattacccctatgctgttgatggactagagatttgGGTTCGATTTTCGATACATAAAGGACCAATGGCGCCACCGAGGAAATCTAGAAGTGTGAATAAGCAATTTTCTACAAATGATATTTCTCCCGAGAAAGACAGAGTAAACTCAAACAAAAACAAGCATCGGAAGAAGAAGTTGTCTGATAAATTGGGATCTCAGTGGAGCAAGGAGGAACTTGAGCAATTCTATGAAGCATACAGAAAGTATGGGAAAGATTGGAAGAAGGTGGCTGCCTCTGTACGGAATAGATCAATTGAAATGGTGGAAGCTCTTTACAATATGAATCGGGCATACCTATCTCTACCAGAAGGAACAGCTTCTGTTGTAGGCCTCATTGCAATGATGACTGATCATTATAATGTGCTGGAAGAGAGTGATAGTGAAAGGGAGAGCAATGAGGCATCAGGATCTCAAAAACCTATGAAACGTAAACGCGAAAAAGTTCAGCTTAGTGTCTCAAAGGATCCTGTACAGTCTCAGTCTGTCAGTTCCAGTGATGGTTGCCTCTCTCTATTGAAGAAGAGACGCATTGATGGTATTCAACCTCGTGCTGTTGGGAAAAGGACACCCCGAGTCCCAGTTTACCACTCTTACAAGCAAGATGATAGGGAGAATTATGTTTCACCTAATAAAAGAAGCCTGAAGTCCACTGTTGATGCTAATGATGACGAAGTTGCACATGTAGCTTTGGCATTAACCAGGGCTGCACAGAGAGGGAGCTCTCCCCTAGTTTCTCGAACACCACATAGGAGAGAAGAACAGAAGTCCTCTCCTGTTCAGAGCTGGGAAAGAATGAACCAAATGTCTAAGACGGCTCGTGCCAAGTTTCGTGATGTTTCCGTGGATGAAGAGTTTTTGGAAGGTAGTATAGAAAGTAGGGGAGCTGAAAATGGAGAATATGTTAAAGATACCGGTTCCTTGATGGATATGGAAGGCAGGGGCACCGGTGAAGTTCTTCGGAAGGGAGAAAAAAATTACAGAAAGAAAGAGAGAGTGAAAAATGTTGGAAATTATCAGCTTGATGATGGAGGAGAAGCATGCAGCGGCACTGAAGAAGGACTTAGTTTTCGTTCTTTGAATTTGAAGGAAAAGAATATGGAGGTTATTAATGAAAAGTTTGAGCAATTCACTCCAACAAGTCAGCGGAAAAGAAACAAAAAACTCTTTTTTGGAGATGAAATCCACGCCTTGAATGCTTTGCAAACTTTGGCTGATCTCTCTCTAATGATGCCGACATCTATAGTTGAATCCGAATCATCTGTCCCGTTGAAGGGAGAAAGAATGACTGTTGATAAAGATGATAAGTCTGCTTTACCCGAAGCAACATCAACAAGTCATAAGAGAAATAAAGTTAAACTCTGCGCAGTCCCTGGAGCTGACACTTCAACCTCCAAAAAATCTAAACTCGGAAAGGATATAGCAAATGATACCAATATTCTCTCTGAATCAAAAGAGCAGCTTCCGTTTGCTGATAGAACATGGAAAAGAAAGCAAAAGTCCATGGTTTCAAAGGTAAGTATAGTTTATTCCTTAATTGTTTTATCCAGCAGATTTTACATTGCTGTAGACGATGATAACAAACCGGTGATTAAAGGAAAATACACTGATCAGGTTTTTACCTCACCGAAACAATCAAAGATGATCAAACCATCAGTGAACTCCCTCGGTGGTGATCAGAAAGATTTGGCAGTATCAACTGCTGAAGTTCCACTCTTAAGTGAAGTTAGTTCACCGACTAAACAAAGAAGTAGACGCAAGATGATTTTTCAGAGACCATCCATGCCTAAAGAGAAGTCCTCTGAGAATGTATTGAAAGGTCAACCTAATAAGTACTTTACCCCAATGGAAAAGAAGCTTTCTAGTTGCTTGTCATCTTCTTTGGTTCGCAGATGGTTTACTTTTGAATGGTTTTACAGCGCACTTGATTATCCATGGTTCGCCAAAAGAGAATTTGTGGAGTACTTAAATCATGTTGGACTAGGGAATATCCCAAGGCTAACTCGTGTTGAGTGGAGTGTCATAAAAAGTTCCCTTGGCAAACCACGCAGGTTTTCTGAACACTTTTTACGTGAAGAAAGACAAAAACTTGAACAGTATCGAGAATCAGTGAGGAAACATTATTCTGAGCTGCGTGCTGGTGTAAGAGATGGACTTCCGACAGATTTGGCGAAACCGTTATATGTTGGACAACGAGTAATTGCCATTCACCCCAAAACCAGAGAGATTCATGATGGTAGTGTGCTTACAGTTGACCATGACAAGTGCAGGATTCAGTTCGACCGTCCTGAATTAGGAGTTGAATTCATCATGGACATTGATTGCATGCCTTTGAATCCATTAGATAATATGCCAGAAGCTTTGAGGAGACAGTTTGGTGCCAGAAAAGCCTCGTTTATGACTATAGAACCACATATTAATGGTAGTTCAAGTTTTGTGGGATGTGAAATGCATGCTTCACCTGCGAAGGCAAATATTGATAACCTCTGTGCACAAGAAGCTTGTGCTCCACCGTGCAAGGTATTGCAGCATCAAGCTAAAGAAGCTGATATAAATGCACTCTCTGAACTAAAGCGTGCTCTTGATAAAAAGGAGACACTGTTAATAGAGCTTCGAAATGCAAATAATGGCATATTGGAAAACCAAAATGGTATAGAGTGTTTGAAAGATTCTGAAGCTTTCAAGAAGCATTACGCCACGGTACTGGTAGAGCTAAAGGAAGCCAGTGGACAGGCATCAACGTTTGATTGGTTATACATTTTTCAGGTTTCTGATACCATGCTTCAGTTGAGGCAACGCAATACCTACCCAGGCAACTCTCTGCCACCATGGATGAAGCCCAAAGCAAATTTCGAAGTTCATGATGATCTTCCTGGTGTGTTGTTGGATAGTTCTTTAGCACAAGAGTCTGGGTCAACTGTCATTGAAATCATTAAAGGATCCAGGCTACGGGCACATGCAATGGTTGATGCTGCATCTCAGGCATGGTCTCAAGCTACAAAGGGAGGTGAAGATGCTATCACGAGGATTTGGCAGTCGTTCAATTCTATTGATTCGCAGCAGTTGTCCTCCAAATACAGGTTACCTGTGATAAGGTCCCAAGGTCAAGCAAATGGCAGTTCTTATCATCATAATCAGTCAACTTACAGAGCATCAGAGCCTTTAAGTAATGATGCATCTGGTCCAAAACTGCATAAAGATGCTGACGGAGATGATATTGATATTCCATCAGAGCTCATCACTTCATGTCTTGCTACATTAGCTATGATACAGAGTTGTACTGAACGACTATACCCTCCTTCAGATGTGGCTCGGATATTAGATTCGGCCGTTACCAGCCTGCAACCGTGCTGTCCTCAAAACCTTTCTATTTACAGAGAAGTTCAAATTCTTTGCGAAAGATAA 5319 0.2841 MIHNCLSFSKEEKSNRHQVKGTVVLMKKNVLDFNDSIASFRDDIREFWGKKVSLRLISAVNADPNNGLKGKLGKPANIEHWSTIRATAGESTLQVSFDWDEEIGTPGAVLIRNNHYSEFYLKTLTLNGVPGQHGDIHFICNSWIYPVEKYEKDRIFFSNKPFLPSGTPSPLLRYREEELKSLRGDGXXXXXXXXXXIYDYACYNDLGNKDKVQDHARPILGGSTEYPYPRRARTGRKPAKDPNYESRLKIENSLKIYVPRDEKFEHLKMSDFLAYALKSIVQVLKPELESIFDSTPNEFDSFDDVHKLYYGGIKVPQSILKGVRDNIHGEMFKEILRTDGENFLKFPLPQVIAADKSAWRTDEEFAREMLAGVNPVIICCLQKFPPSSKLDHKVYGDQSSKITKEDLDINLNGLTVDKAIREKRLFILDHHDTLMPYLRRINSTSTKTYASRTILFLQDNGTLKPLAIELSLPHSDGDQYGAISEVHLPVEEGVKKFIWQLAKAYVGVVDSGYHQLISHWLHTHAVVEPFIIASNRQLSMLHPIHKLLHPHFRDTMNINGLARQILINAGGALESTVFPSKFSMEFSSFLYKDWCFPEQSLPEDLVKRGMAIRDSSSPHGLRLLIEDYPYAVDGLEIWVRFSIHKGPMAPPRKSRSVNKQFSTNDISPEKDRVNSNKNKHRKKKLSDKLGSQWSKEELEQFYEAYRKYGKDWKKVAASVRNRSIEMVEALYNMNRAYLSLPEGTASVVGLIAMMTDHYNVLEESDSERESNEASGSQKPMKRKREKVQLSVSKDPVQSQSVSSSDGCLSLLKKRRIDGIQPRAVGKRTPRVPVYHSYKQDDRENYVSPNKRSLKSTVDANDDEVAHVALALTRAAQRGSSPLVSRTPHRREEQKSSPVQSWERMNQMSKTARAKFRDVSVDEEFLEGSIESRGAENGEYVKDTGSLMDMEGRGTGEVLRKGEKNYRKKERVKNVGNYQLDDGGEACSGTEEGLSFRSLNLKEKNMEVINEKFEQFTPTSQRKRNKKLFFGDEIHALNALQTLADLSLMMPTSIVESESSVPLKGERMTVDKDDKSALPEATSTSHKRNKVKLCAVPGADTSTSKKSKLGKDIANDTNILSESKEQLPFADRTWKRKQKSMVSKVSIVYSLIVLSSRFYIAVDDDNKPVIKGKYTDQVFTSPKQSKMIKPSVNSLGGDQKDLAVSTAEVPLLSEVSSPTKQRSRRKMIFQRPSMPKEKSSENVLKGQPNKYFTPMEKKLSSCLSSSLVRRWFTFEWFYSALDYPWFAKREFVEYLNHVGLGNIPRLTRVEWSVIKSSLGKPRRFSEHFLREERQKLEQYRESVRKHYSELRAGVRDGLPTDLAKPLYVGQRVIAIHPKTREIHDGSVLTVDHDKCRIQFDRPELGVEFIMDIDCMPLNPLDNMPEALRRQFGARKASFMTIEPHINGSSSFVGCEMHASPAKANIDNLCAQEACAPPCKVLQHQAKEADINALSELKRALDKKETLLIELRNANNGILENQNGIECLKDSEAFKKHYATVLVELKEASGQASTFDWLYIFQVSDTMLQLRQRNTYPGNSLPPWMKPKANFEVHDDLPGVLLDSSLAQESGSTVIEIIKGSRLRAHAMVDAASQAWSQATKGGEDAITRIWQSFNSIDSQQLSSKYRLPVIRSQGQANGSSYHHNQSTYRASEPLSNDASGPKLHKDADGDDIDIPSELITSCLATLAMIQSCTERLYPPSDVARILDSAVTSLQPCCPQNLSIYREVQILCER 1772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00550 1772 MobiDBLite consensus disorder prediction 1674 1708 - -
Car04g00550 1772 Pfam PLAT/LH2 domain 59 157 IPR001024 GO:0005515
Car04g00550 1772 ProSitePatterns Lipoxygenases iron-binding region signature 2. 541 551 IPR020834 GO:0016702|GO:0046872
Car04g00550 1772 ProSitePatterns Lipoxygenases iron-binding region signature 1. 514 528 IPR020833 GO:0016702|GO:0046872
Car04g00550 1772 Coils Coil 1328 1348 - -
Car04g00550 1772 ProSiteProfiles PLAT domain profile. 31 158 IPR001024 GO:0005515
Car04g00550 1772 Gene3D - 163 267 - -
Car04g00550 1772 MobiDBLite consensus disorder prediction 1674 1693 - -
Car04g00550 1772 PANTHER PROTEIN ALWAYS EARLY 1-RELATED 648 1769 IPR028306 -
Car04g00550 1772 SMART sant 689 737 IPR001005 -
Car04g00550 1772 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 17 162 IPR036392 GO:0005515
Car04g00550 1772 Gene3D PLAT/LH2 domain 9 162 - -
Car04g00550 1772 MobiDBLite consensus disorder prediction 649 688 - -
Car04g00550 1772 SMART LH2_4 17 159 IPR001024 GO:0005515
Car04g00550 1772 Gene3D - 488 642 - -
Car04g00550 1772 PRINTS Lipoxygenase signature 514 531 IPR013819 GO:0016702|GO:0046872
Car04g00550 1772 PRINTS Lipoxygenase signature 496 513 IPR013819 GO:0016702|GO:0046872
Car04g00550 1772 PRINTS Lipoxygenase signature 534 554 IPR013819 GO:0016702|GO:0046872
Car04g00550 1772 Coils Coil 1492 1515 - -
Car04g00550 1772 ProSiteProfiles Myb-like domain profile. 691 723 IPR001005 -
Car04g00550 1772 Pfam Lipoxygenase 171 639 IPR013819 GO:0016702|GO:0046872
Car04g00550 1772 PANTHER LIN-9 648 1769 IPR010561 GO:0006351|GO:0017053
Car04g00550 1772 MobiDBLite consensus disorder prediction 223 243 - -
Car04g00550 1772 MobiDBLite consensus disorder prediction 876 899 - -
Car04g00550 1772 MobiDBLite consensus disorder prediction 762 803 - -
Car04g00550 1772 CDD SANT 693 734 IPR001005 -
Car04g00550 1772 Gene3D - 358 487 - -
Car04g00550 1772 SUPERFAMILY Homeodomain-like 687 736 IPR009057 -
Car04g00550 1772 PRINTS Plant lipoxygenase signature 128 146 IPR001246 GO:0016491
Car04g00550 1772 PRINTS Plant lipoxygenase signature 154 175 IPR001246 GO:0016491
Car04g00550 1772 PRINTS Plant lipoxygenase signature 194 210 IPR001246 GO:0016491
Car04g00550 1772 PRINTS Plant lipoxygenase signature 296 317 IPR001246 GO:0016491
Car04g00550 1772 PRINTS Plant lipoxygenase signature 383 402 IPR001246 GO:0016491
Car04g00550 1772 PRINTS Plant lipoxygenase signature 227 246 IPR001246 GO:0016491
Car04g00550 1772 PRINTS Plant lipoxygenase signature 449 473 IPR001246 GO:0016491
Car04g00550 1772 PRINTS Plant lipoxygenase signature 344 360 IPR001246 GO:0016491
Car04g00550 1772 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 685 723 IPR017930 -
Car04g00550 1772 Pfam DIRP 1275 1376 IPR033471 -
Car04g00550 1772 Pfam Myb-like DNA-binding domain 691 728 IPR001005 -
Car04g00550 1772 ProSiteProfiles SANT domain profile. 688 723 IPR017884 -
Car04g00550 1772 Gene3D - 268 357 IPR027433 -
Car04g00550 1772 MobiDBLite consensus disorder prediction 762 790 - -
Car04g00550 1772 SMART DIRP_2 1276 1377 IPR033471 -
Car04g00550 1772 MobiDBLite consensus disorder prediction 655 669 - -
Car04g00550 1772 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 161 638 IPR013819 GO:0016702|GO:0046872
Car04g00550 1772 CDD PLAT_LH2 17 159 IPR042057 -
Car04g00550 1772 Gene3D - 651 745 - -
Car04g00550 1772 SUPERFAMILY Lipoxigenase 163 638 IPR036226 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00550 Car-Chr4 5495090 5518068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00550 13 638 Acyl Lipid Metabolism Gene Families AT1G55020 64.659 0.0 843
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Car04g00550 Lipoxygenase 9.2e-205 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00550 - - gmx:100789533 1587.01