Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00530 ATGGATAACACTCATCGCTTCAATCAAAATGACAGAACTACCCTCCTCTGTTTTTTCTTCACTTTCCTTTTTTTCTCCGGCGTCCCCCTCGCCGGAGCTCAAACCTCCAACGACAACCCAAACGATAGCTATTACAACCGTGTAAGCCCCTCCATGGCTATAATAATCGTAATTCTGATCGCCGCTCTTTTTCTCATGGGTTTCTTCTCCATCTACATCCGTCAATGCGCCGATTCACCTTCCAACAGCATCCGCAACATCGCCGGAGTTACCGGACGCTCTCGCCGTGGGGCGCGTGGCCTCGACCCCTCGGTAATCGAGACTTTTCCAACATTCGAATATTCTGTGGTTAAGATTCACAAAATTGGTAAAGGTGCACTAGAATGCGCCGTGTGTTTAAACGAATTCGAAGAGACCGAAACGCTGCGTTTAATTCCAAAGTGTGACCACGTGTTTCACCCTGAGTGTATTGACGAGTGGCTAAGTTCACATACCACTTGCCCCGTTTGCCGAGCCAACTTGGTTCCGCAACCTGGCGAATCGGTTCACGGGATTCCTTTGTTGAATACAGAACAAGAAGACATAGAAGCTCAAAACGACGCCGTTGAAACTCTTCCTGAAAATCAAAACACCGAAACTGCTTTAAAAGAGTCAGCTGAACCGGAAGTGTTGTCATTAAACCAAACGCTTAACCGGAACCGGACGAGAGGTTCGCGGTCCGGTCGGCCTCGTTGGTTCCCTCGGTCTCACTCGACCGGTCATTCGTTGGTCCAACCAGGTGAGAACACTGAACGTTTCACTTTGAGGCTACCAATGAATGTGAGGAAGCAAATACTACAAAACCCGGAATTGCATCGGGCTAGAAGCTTGGTTGTGCTGCCAAGAGAAACTAGTTCTCGGCGGGGATATCGAACCGGTGGTGGGGAGGGAAGTAGTAGAGGGAAATCTGTGAGGTGGTTGGATCGGGGTTTTAAATCAGACCGGTGGGTTTTCACGATGGCGCCTCCTTTTCTTGTTAGAGCATCTTCGATTAGGTCACCGAGGGTAGCTAATAGCGCTGGTGAAGGTACCTCTAGTTCAACAGCAGCGGCGGCGGCTGTGGACTCACCACGTCCTCCAGTTTAA 1125 0.4978 MDNTHRFNQNDRTTLLCFFFTFLFFSGVPLAGAQTSNDNPNDSYYNRVSPSMAIIIVILIAALFLMGFFSIYIRQCADSPSNSIRNIAGVTGRSRRGARGLDPSVIETFPTFEYSVVKIHKIGKGALECAVCLNEFEETETLRLIPKCDHVFHPECIDEWLSSHTTCPVCRANLVPQPGESVHGIPLLNTEQEDIEAQNDAVETLPENQNTETALKESAEPEVLSLNQTLNRNRTRGSRSGRPRWFPRSHSTGHSLVQPGENTERFTLRLPMNVRKQILQNPELHRARSLVVLPRETSSRRGYRTGGGEGSSRGKSVRWLDRGFKSDRWVFTMAPPFLVRASSIRSPRVANSAGEGTSSSTAAAAAVDSPRPPV 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00530 374 MobiDBLite consensus disorder prediction 212 236 - -
Car04g00530 374 MobiDBLite consensus disorder prediction 346 365 - -
Car04g00530 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 176 IPR013083 -
Car04g00530 374 ProSiteProfiles Zinc finger RING-type profile. 129 171 IPR001841 -
Car04g00530 374 PANTHER RING FINGER DOMAIN-CONTAINING 25 317 - -
Car04g00530 374 MobiDBLite consensus disorder prediction 346 374 - -
Car04g00530 374 MobiDBLite consensus disorder prediction 212 259 - -
Car04g00530 374 CDD RING-H2_EL5_like 128 171 - -
Car04g00530 374 SUPERFAMILY RING/U-box 124 178 - -
Car04g00530 374 SMART ring_2 129 170 IPR001841 -
Car04g00530 374 Pfam Ring finger domain 128 171 IPR001841 -
Car04g00530 374 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 25 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00530 Car-Chr4 5366130 5368087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00530 22 374 Rapid Response to Elicitors AT3G05200 44.836 8.42e-93 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00530 K10664 - gmx:100810865 483.796
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02995 03 75048598 75050304 Car04g00530 04 5366130 5368087 PCT