Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00529 ATGTGTTTACCTGAAGGAGAAAGAGATAGAGAGAGAACCATGGCACTAGAAACAGTGGTATATCCACAAACACAAGACCCTTTTAGTTATGGAATCAAAGACTGTTACAACTTCAACTTTCTATCAACCAACTTTGTCTATGAAGATTTCAATTTTGTCACTAAAGAACAACAAAAGCATGGATCTTTCATTTTTCTAGacaaccaaacagagaataacaacacaacaacaacaacatcctcgtcaatgttacaaccaacaccaacaacaCCCCATTTGAATGAACTTCAAGAAACAACTGACCCAAGTAGTAAAAATCCAAACTTTGATACAGTTGTTTTTCGTCCCAAAAGGCGCAGAGCAAGAAGTAGAAAAAACAAAGAAGAAATTGAGAATCAAAGAATGACTCACATTGCTGTTGAACGCAATAGAAGAAAACAGATGAATCAGTATCTTTCTGTTCTTCGTTCTCTAATGCCAGATTCTTACATCCAAAGGGGTGATCAAGCTTCTATAATTGGAGGTGCTATTAACTTTGTTAAAGAGCTTGAGCAAAAATTGCATTTTCTTGGTTCTAAAAAAGAAGAAGTGAAATCTGATGATGTTGGTGAAGGATCAAACAAGTCATTTTCTGAGTTCTTTTCATTTCCACAGTATTCAACAAGTGGTGGTAATTCTGCATCAGTAATTGGTGAGAAAGTGGGTGAGATTGCTGATATAGAAGTCACAATGGTTGAAAGCCATGCAAATCTTAAAATAAGATCAAAAAAGAGGCCAAAGCAGCTCTTGAAAATGGTATCTGGTTTGCATAATATGCATCTCACAATCCTGCATCTAAATGTTACTACTACTTGTGAAATTGTACTATACTCTCTTAGTGTTAAGGTAGAAGATGATTGCAAGTTGGGATCAGTGGATGATATAGCTGCAGCTGTATACCAGATGTTGAATAGGATTCAACAAGAGACAATGTTGAATTAA 981 0.3293 MCLPEGERDRERTMALETVVYPQTQDPFSYGIKDCYNFNFLSTNFVYEDFNFVTKEQQKHGSFIFLDNQTENNNTTTTTSSSMLQPTPTTPHLNELQETTDPSSKNPNFDTVVFRPKRRRARSRKNKEEIENQRMTHIAVERNRRKQMNQYLSVLRSLMPDSYIQRGDQASIIGGAINFVKELEQKLHFLGSKKEEVKSDDVGEGSNKSFSEFFSFPQYSTSGGNSASVIGEKVGEIADIEVTMVESHANLKIRSKKRPKQLLKMVSGLHNMHLTILHLNVTTTCEIVLYSLSVKVEDDCKLGSVDDIAAAVYQMLNRIQQETMLN 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00529 326 SMART finulus 138 189 IPR011598 GO:0046983
Car04g00529 326 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 14 326 - -
Car04g00529 326 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 132 183 IPR011598 GO:0046983
Car04g00529 326 Gene3D - 122 207 IPR036638 GO:0046983
Car04g00529 326 Coils Coil 180 200 - -
Car04g00529 326 MobiDBLite consensus disorder prediction 70 110 - -
Car04g00529 326 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 132 197 IPR036638 GO:0046983
Car04g00529 326 Pfam Helix-loop-helix DNA-binding domain 133 184 IPR011598 GO:0046983
Car04g00529 326 PANTHER MAX DIMERIZATION, MAD 14 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00529 Car-Chr4 5332118 5334049 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00529 14 296 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 48.197 1.01e-72 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car04g00529 HLH 6.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00529 - - pvu:PHAVU_007G181900g 414.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02996 03 75063302 75064713 Car04g00529 04 5332118 5334049 PCT