Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00517 ATGGCGAATGGGGGTGACGCTCACCAGCTACGTTATTGTTTATGGAACCATAAGAGAAGCTTTGCTAGTAAATCAAAGGAAGTCCCTATTGTGGATGCTCTTAATCTTAAACCAAATACTCTAGGATCTCTTCTTGCTTGGTCTGCTTCTGCTCAAGACTTGAGAGATATGGATCTTGAGAAAGAGAAAGAAGACGAGGGGTCTCCAAGAGGAGTCTTAGAGGCTTGTGTTAGAGGGTTTGAATCTAAGCAACCACCTGAATTGGAAACCAGTTGTTCAAATTCGAGGGCGCGGTCGCATTGGGGCAAATTTTTTAAGTTGTGGAAGAAAAAATCAGTTAAACGCCTTTCTTCTTTTCATCCGATTGGTGTGCCGAAGATACCAAAGTGGAAGAGTAAAAGCACTAGGGAAAATTTTGTTATGAGTAATGTACACAATTTAAGGTCTTCTTTGGTGACTTTTAGCCTCTCTGATCTCATAAAAGCAACCAATAATTTCAGCAATGAAAATTTGATTGGAAGAGGTGGTTTTGCCGAGGTTTACAAGGGTAGGCTCCAAGATGGACAACTAATAGCTGTGAAGAAAATGACTACAGGGACCACAGAGGAGAAAACAGCTGGCTTTCTATCTGAGCTAGGCATAATTGCTCATGTTGATCATCCTAATACTGCAAAGCTTATTGGATGTGGTGTAGATGGAGAAATGCACCTTGTCTTTGAACTTTCTACACTTGGAAGTTTAGGATCTGTTCTTCATGGTTCAGATAAATGCAAAttggattggagtaaaaggtataaagttgctcttggaatagccgatggtcttctttatctgcatgagaattgtcaaaggagaataattcatagagatattaaggcagagaatattctgctcACAGAGGATTTTGAGCCACAGATTTGTGATTTTGGGCTTGCAAAGTGGTTACCAGAACAACTGACTCACCATAATGTGTCCACATTTGAAGGCACATTTGGGTATTTTGCTCCTGAGTATTACATGCATGGCATAGTGGATGAGAAAACCGATGTTTATTCTTTTGGGGTTCTACTTTTGGAGATCATAACTGGGCGTAGGGCTTTGGATCATATGAAGAAAAGTGTTGTGATATGGGCAAAACCGTTGCTAGATGCTAATAATATGAAAGACCTTGTTGATCCTTCTCTTGGTGATAACTATGACCAAAGACAAATGGGATGTGTTGTTTTGACTGCATCAATGTGTGTTGAGCAGTCTCCTATCCTACGCCCTCGCATGAATCAGGTTGTAACACTGCTAAGAGGGGAAGACAGTATCCTATCTACAAAAGCAAGCAAAAGAAGGCCTTTCCAAAGAACATATTCAGAAGAGATATTAGATGCACAAGAATACAACTCCACAAAATATCTAAGAGATCTCAATCGACATAAGCTGGTTGCCTTGGGTCTTGACTCATGA 1455 0.3732 MANGGDAHQLRYCLWNHKRSFASKSKEVPIVDALNLKPNTLGSLLAWSASAQDLRDMDLEKEKEDEGSPRGVLEACVRGFESKQPPELETSCSNSRARSHWGKFFKLWKKKSVKRLSSFHPIGVPKIPKWKSKSTRENFVMSNVHNLRSSLVTFSLSDLIKATNNFSNENLIGRGGFAEVYKGRLQDGQLIAVKKMTTGTTEEKTAGFLSELGIIAHVDHPNTAKLIGCGVDGEMHLVFELSTLGSLGSVLHGSDKCKLDWSKRYKVALGIADGLLYLHENCQRRIIHRDIKAENILLTEDFEPQICDFGLAKWLPEQLTHHNVSTFEGTFGYFAPEYYMHGIVDEKTDVYSFGVLLLEIITGRRALDHMKKSVVIWAKPLLDANNMKDLVDPSLGDNYDQRQMGCVVLTASMCVEQSPILRPRMNQVVTLLRGEDSILSTKASKRRPFQRTYSEEILDAQEYNSTKYLRDLNRHKLVALGLDS 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00517 484 ProSiteProfiles Protein kinase domain profile. 166 464 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g00517 484 ProSitePatterns Protein kinases ATP-binding region signature. 172 195 IPR017441 GO:0005524
Car04g00517 484 Gene3D Transferase(Phosphotransferase) domain 1 243 457 - -
Car04g00517 484 ProSitePatterns Serine/Threonine protein kinases active-site signature. 286 298 IPR008271 GO:0004672|GO:0006468
Car04g00517 484 SMART serkin_6 166 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g00517 484 SUPERFAMILY Protein kinase-like (PK-like) 145 432 IPR011009 -
Car04g00517 484 PANTHER OS08G0249100 PROTEIN 46 476 - -
Car04g00517 484 Gene3D Phosphorylase Kinase; domain 1 127 240 - -
Car04g00517 484 Pfam Protein tyrosine and serine/threonine kinase 169 378 IPR001245 GO:0004672|GO:0006468
Car04g00517 484 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-PROTEIN KINASE RBK2 46 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00517 Car-Chr4 5252268 5256271 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00517 130 476 Receptor kinase-like Gene Family AT1G53420 39.437 1.29e-72 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Car04g00517 PK_Tyr_Ser-Thr 1.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00517 - - cam:101512181 966.837