Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00505 ATGGGTTGTGTAATTAGTCGAGAAGTGCAATCGGGTATAGTTTCTGAGGTGAAGGAGGAGAAGAGTTTGACTGTTGAGTCTAATAGGACGGTTGAAGAAGTGTCGACGAGCAGAGGTGAGGGGAATGTGGTAGAGGTTCATAATGGTGAGAAGGTGAAGGAGAAGGAGGAGAAGAGTGACGGTGATGGGGTTCAGCGGCCAAAGGGTGAAAGAAGAAGATATAAGCCTAATCCGAGGTTAAGCAATCCACCGAAGCATTTGCAAGGGGAGCAAGTAGCAGCTGGATGGCCATCTTGGCTTACAGCAGTTTGTGGGGAAGCTCTTAATGGGTGGATTCCACGGAAGGCTGACACATTCGAGAAAATAGATAAGATCGGTCAAGGAACATATAGTAATGTGTACAAAGCTAAAGACACGATAACGGGTAAGATAGTTGCATTGAAGAAGGTTCGATTTGACAATTTGGAACCTGAGAGTGTAAAATTTATGGCTAGAGAGATCCTTATATTGCGAAGATTGGATCATCCCAATGTTATAAAGTTAGAAGGTTTAGTTACATCTAGAATGTCGTGGAGTTTGTATCTGGTGTTTGATTACATGGTACACGATTTAGCTGGACTTGCTGCAAGCCCTGATATCAAGTTCACAGAGCCTCAGGTAAAATGTTACATGCATCAACTTCTATCAGGACTTGAGCATTGTCATAATCGACATGTACTTCATCGCGATATTAAAGGATCAAATCTTCTGATTGACAACGAAGGTGTACTCAAAATTGCTGACTTTGGACTTGCATCTTTCTTTGATCCAAACCGTAGGCATCCCATGACTAATCGTGTGGTTACCCTTTGGTACCGGCCTCCTGAGTTGCTTCTCGGTGCCACAGATTATGGTGTGGGTGTGGACCTTTGGAGTGCTGGTTGCATTTTAGGAGAATTGTTGTACGGGAAACCTATTATGCCTGGTCGAACAGAGGTGGAACAACTGCATAAGATATACAAGCTTTGCGGTTCACCTTCTGAGGAGTATTGGAAGAAGTCAAAGTTGCCTAATGCTACCTTGTTCAAACCTCGCGAGCCATACAAAAGATGCATAAGAGATGTATTTAAAGAGTTTCCACCTTCTGCTCTGCCCCTTGTCGATACTCTTCTTGCAATTGATCCAGTCCAACGGAAGAGTGCCTCAGATGCTCTAAGAAGTGAGTTCTTTACAACAGAACCTTATGCTTGTGATCCTTCTAGTCTTCCAAAGTATCCCCCAACCAAGGAAATGGATGTTAAACGACGCGACGATGAAGCAAGAAGATCAAGAGCTGCAGCCAAAGCTCGAGTTGATGGGGGAAAGAAGCATCGGACACGTGATCGTGCTGTAAAAGCTGCTCCTGCTCCTGAAGCCAATGCTGAGCTTCAACACAATATTGATAGAAGGCGTCTAATCACTCATGCTAATGCTAAGAGCAAGAGTGAAAAGTTCCCTCCGCCGCACGAAGACGGACAACTTGGCTTTCCTTTGGGAGCTTCAAATCATATTGATCCAGATATAGTTCCTCATGATGTCTCTTTGGATTCAATGTCATATACATTTTCAAAGGAACCGTTCCAAGCTTGGTCAGGTCCCATAGGTAATCATCCTACTACCAATGGTATCACGAAGCGGAAGACGAAAAACACTGCAAATGATGCATTGGATTTATCAAAACCTTATAAAGGAACCCTCAAGGATAAGGGTAAAGGAAAGAAAATCATAGCTTAA 1752 0.4355 MGCVISREVQSGIVSEVKEEKSLTVESNRTVEEVSTSRGEGNVVEVHNGEKVKEKEEKSDGDGVQRPKGERRRYKPNPRLSNPPKHLQGEQVAAGWPSWLTAVCGEALNGWIPRKADTFEKIDKIGQGTYSNVYKAKDTITGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSWSLYLVFDYMVHDLAGLAASPDIKFTEPQVKCYMHQLLSGLEHCHNRHVLHRDIKGSNLLIDNEGVLKIADFGLASFFDPNRRHPMTNRVVTLWYRPPELLLGATDYGVGVDLWSAGCILGELLYGKPIMPGRTEVEQLHKIYKLCGSPSEEYWKKSKLPNATLFKPREPYKRCIRDVFKEFPPSALPLVDTLLAIDPVQRKSASDALRSEFFTTEPYACDPSSLPKYPPTKEMDVKRRDDEARRSRAAAKARVDGGKKHRTRDRAVKAAPAPEANAELQHNIDRRRLITHANAKSKSEKFPPPHEDGQLGFPLGASNHIDPDIVPHDVSLDSMSYTFSKEPFQAWSGPIGNHPTTNGITKRKTKNTANDALDLSKPYKGTLKDKGKGKKIIA 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00505 583 Gene3D Transferase(Phosphotransferase) domain 1 202 443 - -
Car04g00505 583 Pfam Protein kinase domain 119 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g00505 583 MobiDBLite consensus disorder prediction 567 583 - -
Car04g00505 583 MobiDBLite consensus disorder prediction 44 77 - -
Car04g00505 583 Gene3D Phosphorylase Kinase; domain 1 106 201 - -
Car04g00505 583 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Car04g00505 583 ProSiteProfiles Protein kinase domain profile. 119 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g00505 583 MobiDBLite consensus disorder prediction 539 555 - -
Car04g00505 583 ProSitePatterns Protein kinases ATP-binding region signature. 125 148 IPR017441 GO:0005524
Car04g00505 583 SMART serkin_6 119 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g00505 583 MobiDBLite consensus disorder prediction 537 583 - -
Car04g00505 583 CDD STKc_CDK9_like 119 403 - -
Car04g00505 583 PANTHER OS01G0367700 PROTEIN 44 551 - -
Car04g00505 583 MobiDBLite consensus disorder prediction 413 464 - -
Car04g00505 583 MobiDBLite consensus disorder prediction 421 458 - -
Car04g00505 583 SUPERFAMILY Protein kinase-like (PK-like) 113 410 IPR011009 -
Car04g00505 583 MobiDBLite consensus disorder prediction 19 88 - -
Car04g00505 583 PANTHER CELL DIVISION PROTEIN KINASE 44 551 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00505 Car-Chr4 5156644 5162231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00505 111 441 Core Cell Cycle Gene Families AT5G10270 53.026 1.33e-121 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Car04g00505 Pkinase 1.5e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00505 K08819 - gmx:100817289 980.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g03017 03 75235445 75240793 Car04g00505 04 5156644 5162231 PCT