Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00488 ATGGCGTTTACCATCCGAACCAGAAAGTTCATGACCAACCGCCTTCTCGCTCGGAAACAATTTGTCGTTGATATCCTTCACCAAGGGATGGCAAATGTTTCCAAGGCTGAAATAAAGGAGAAACTTGCACTAATGTATAATGTGAAGGACCCTAACACTGTATTTGTCTTCAAGTTCCGAACTAATTTTGGAGGTGGCAAATCCACTGGATATGGTTTGATATATGATTCAGTTGAGAATGCAAAGAAGTATGAGCCCAAATACCGGCTTATCAGGAATGGACTTGATACTAAGGTTGAAAAGTCAAGGAAGCAAATGAAGGAAAGAAAGAACAGAGCAAAGAAGATTCGCGGAGTGAAGAAGACAAAGGCATCCGATGCTGCCAAGGCTTGA 393 0.4198 MAFTIRTRKFMTNRLLARKQFVVDILHQGMANVSKAEIKEKLALMYNVKDPNTVFVFKFRTNFGGGKSTGYGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKA 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00488 130 ProSitePatterns Ribosomal protein S24e signature. 63 85 IPR018098 -
Car04g00488 130 PANTHER 40S RIBOSOMAL PROTEIN S24 2 129 IPR001976 GO:0003735|GO:0005840|GO:0006412
Car04g00488 130 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 3 105 IPR012678 GO:0003735|GO:0005840|GO:0006412
Car04g00488 130 Pfam Ribosomal protein S24e 22 100 IPR001976 GO:0003735|GO:0005840|GO:0006412
Car04g00488 130 Gene3D - 1 129 - -
Car04g00488 130 Hamap 30S ribosomal protein S24e [rps24e]. 1 103 IPR001976 GO:0003735|GO:0005840|GO:0006412
Car04g00488 130 MobiDBLite consensus disorder prediction 99 130 - -
Car04g00488 130 PANTHER 40S RIBOSOMAL PROTEIN S24 2 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00488 Car-Chr4 4983038 4985537 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00488 2 129 Cytoplasmic Ribosomal Protein Gene Family AT5G28060 83.594 2.33e-77 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00488 K02974 - gmx:100802918 236.498
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g03034 03 75354700 75356758 Car04g00488 04 4983038 4985537 PCT