Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00479 ATGTTTGATGGAGTCCCTGACCAGTTCCACCAATTCATAACTCCAAGAACCTCATCACTACCTCTTCACTTACCTTTTCCTCTTTCTTCAACTCCAAATAATACAACTTTTCCTACTTTTGATCCTTATAACCAACAAAACCACCCTTCTCATCATCATCAAATACCACTCCAAGTTCAACCCAATCTCTTGCACCCATTACACCACCAAAAAGATGAAGACAAACAAGAAAACACTAGTGTTACTACTCCTTCTATGAACTTCCAAATTGAAAGAGATCATAGACAAATTCTTCCACAACTCGTTGATCCTTGGACTAATGACGAAATTCTTACACTTTTGAAGATCAGATCCAACATGGAAAGTTGGTTCCCAGATTTCACTTGGGAACACGTCTCAAGGAAGCTAGCAGAGGTTGGATATAAACGTAGTGCAGATAAATGCAAGGAGAAGTTTGAAGAAGAAAGTAGATTTTTCAACAACATtaatattaataataataataataacaacaataataataataataataatTACGGTAAGAGTTATCGGTTTGTTACTGAACTTGAAGAGCTTTataataataataataataataataataatCAAGTTGTTGAGAGTGAAAAGCCAAGTGAAGGAAAAGACAAGATGGACCATGATGAAGATTCAAGAAACGACGATTTATTGGTGACAAAGAAAAAAGAAGAGAGTGTGACAAATGAAGAGAGGAAGAGAAAGAGAGGTGAAAATAGGTTTGAAGTTTTTAAGGGTTTTTGTGAGAGTGTTGTGAAGAAAATGATAGAACAACAAGAAGAGATGCACAACAAGCTTATTGAAGATATGTTAAAAAGAGATGAAGAGAAGTTTGAAAGAGAAGAAGCTTGGAAGAAACAAGAGATGGAGAAAATGAACAAAGAGCTTGAGTTGATGGCACGTGAGCAAGCTATTGCTGGTGATAGACAAGCTAATATTATTGAATTTTTGAACAAATTCTCAACTACTAAGGTAACAACATTATTAAATTCTTCCATAATATTGCACTCTCAAAACCCTAATATTCCTTCTTCTATTGACAAAACTATTCAACCAACACCTTCTTTTGAAAACCCTAGCTCAAACCTTCCTTCTAAGAAAAACCCTAATATTTCTTCTCTAGATAGTGTTCCACTTGTTAAAAATTCAAGATCTTCATATAGTAATCTTATTATCAATGAGAAAGAGGATATTGGGAGAAGATGGCCAAAAGATGAAGTGTTGGCATTGATAAACTTGAGGTGCAATAATAATAATAACAACAATGAAGAAAAGGAAGGGAATAAGGCTCCTTTGTGGGAGAGAATATCACAAGGAATGTTGGAGTTAGGGTACAAGAGAAGTGCAAAGAGGTGCAAAGAGAAATGGGAGAACATAAACAAGTACTTTAGAAAAACTAAGGATGCTAATAGGAAAAGGTCACTTGACTCAAGAACTTGTCCTTACTTTCATCTATTGAGCAATCTTTATAACCAAGGGAAGCTTGTTCTACAATCTGATCAAAACCAAGAAAGTAATTTGAATGTGCAAGAAAATATTCAAGACCAAATTGAAGTAGCTCCAGCAGATGAAAACAAAGGTGGTGAGTCTTCTCAAGTGGGGCCTGCATGCTGGTAA 1650 0.3448 MFDGVPDQFHQFITPRTSSLPLHLPFPLSSTPNNTTFPTFDPYNQQNHPSHHHQIPLQVQPNLLHPLHHQKDEDKQENTSVTTPSMNFQIERDHRQILPQLVDPWTNDEILTLLKIRSNMESWFPDFTWEHVSRKLAEVGYKRSADKCKEKFEEESRFFNNININNNNNNNNNNNNNNYGKSYRFVTELEELYNNNNNNNNNQVVESEKPSEGKDKMDHDEDSRNDDLLVTKKKEESVTNEERKRKRGENRFEVFKGFCESVVKKMIEQQEEMHNKLIEDMLKRDEEKFEREEAWKKQEMEKMNKELELMAREQAIAGDRQANIIEFLNKFSTTKVTTLLNSSIILHSQNPNIPSSIDKTIQPTPSFENPSSNLPSKKNPNISSLDSVPLVKNSRSSYSNLIINEKEDIGRRWPKDEVLALINLRCNNNNNNNEEKEGNKAPLWERISQGMLELGYKRSAKRCKEKWENINKYFRKTKDANRKRSLDSRTCPYFHLLSNLYNQGKLVLQSDQNQESNLNVQENIQDQIEVAPADENKGGESSQVGPACW 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00479 549 CDD GT1 411 478 - -
Car04g00479 549 ProSiteProfiles Myb-like domain profile. 412 471 IPR001005 -
Car04g00479 549 ProSiteProfiles Myb-like domain profile. 104 156 IPR001005 -
Car04g00479 549 PANTHER - 14 545 - -
Car04g00479 549 MobiDBLite consensus disorder prediction 33 53 - -
Car04g00479 549 MobiDBLite consensus disorder prediction 194 246 - -
Car04g00479 549 PANTHER TRIHELIX TRANSCRIPTION FACTOR GTL2 14 545 - -
Car04g00479 549 MobiDBLite consensus disorder prediction 208 246 - -
Car04g00479 549 Pfam Myb/SANT-like DNA-binding domain 411 498 IPR044822 -
Car04g00479 549 Pfam Myb/SANT-like DNA-binding domain 103 171 IPR044822 -
Car04g00479 549 MobiDBLite consensus disorder prediction 359 388 - -
Car04g00479 549 Gene3D - 105 160 - -
Car04g00479 549 Gene3D - 413 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00479 Car-Chr4 4918402 4921416 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00479 1 503 Trihelix Transcription Factor Family AT5G28300 36.426 1.82e-64 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Car04g00479 Myb_DNA-bind_4 1.4e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00479 - - ccaj:109795059 600.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g03042 03 75421991 75424322 Car04g00479 04 4918402 4921416 PCT