Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00478 ATGGAGCAGTATGAAGTACTTGAGCAAATTGGAAAAGGTGCTTTTGGTTCTGCACTTCTTGTGAGACATAAACATGAGAAGAAAAAATATGTGCTGAAGAAGATAAGACTTGCCCGCCAAACTGAGCGCTCTCGTAGATCGGCACACCAGGAGATGGAGCTTATCTCTAAATTACGAAACCCGTTTATTGTGGAGTATAAAGATTCATGGGTAGAAAAGGGTTGCTATGTCTGCATTATTATAGGTTATTGTGAGGGTGGAGATATGGCGGAGGCTATAAAAAAGGCTCATGGTGTTCTGTTTTCCGAGGAGAAACTTTGCAAATGGCTTGTGCAACTTCTTATGGCACTTGAGTACCTGCATATGAATCACATTCTTCATCGCGATGTCAAGTGTTCAAATATCTTCTTGACGAAAGGTCATGACATATGTCTGGGTGATTTTGGACTTGCTAAAATGTTGACTTCTGACGATCTTGCTTCCTCTGTTGTGGGAACCCCTAGCTACATGTGTCCTGAGCTCCTTGCTGATATACCTTATGGTTCTAAATCAGATATTTGGTCCTTGGGATGTTGTTTATACGAAATGACAGCACATAAGCCTGCATTCAAAGCATTTGATATACAAGCATTGATTATAAAGATTAGTAAGTCCATAGTGGCTCCACTACCAACAAAATATTCTAGTTCATTTCGAAGTCTTGTTAAAAGCATGCTGCGGAAAAATCCAGAGCTGAGGCCCAGTGCTTCAGAGCTTCTTGGGCACCCACATCTTCAATCTTATGTTCTAAAGATCCATCTCAAACTCAATAGCCCCAGGCGAAATACATTGCCTGCTCATTGGCCAGAGTCAAAGTACACGAAGAAGACTAGATTTTTAGTGCCAGAAGATGATACTGTTACCATCTGTAGAGATAAGCGCTATTCCTATAGTAATGACCGGACTCTAAATCCTTGTGTATCTGGAGCTGATCAAGATTCTGTATGCTCCACCCTAGAAATAGATTGTACTCCCGATCATTTGAATCAAAGGTTAGCTGAATTATGTACAGGAGATAGCCGTGACATGAAGTCAGTCCATAAACCTGTTGTTTCCAAAACTTCTAGTATTGCTAAGACTCCAAAGTTCACTTCATCAAAAGTTTCTGCTACCAACAGGAAATCAATGGAACACTCAAAGAATCGTAAGGTGGTAAATCAAGCTCTTCCTGTTTCACACAGCATCACAAAGTCTGCTCATACAAATCGCAGAGCATCATTTCCATTGCCAACAAGAGGTGGTATTCAGCAACCTCCTTTCAGGCAGACTGTTGGTTTACTTAGCAATGTGTCTTCACCTGATATCTCAGTAAACTCTCCTCGTATTGATAAGATAGCTGAATTCCCATTAGCATCATACGAAGATTCTTTCTTCCCAATCAATAGAACTTCAACCTCTGCACAAGGTTCCTTAGGATTCCCATCTCGCGACAATTATTCTTCAACTGTTATAGACAAATGCACAATAGAGGTACGCGACAGAGCCTCTATTAAGCCAAGTTCTACGGATGATTGGCAGGGAATCAAGCGCAGCATGTTAAAGGAAATTCACAAGGATAAAAGTGGTTCGTCCGATCAAAATGCAACGGCAGGTGCATCAAGCCACACCTCTTCAGACTTGCGGCGCCGACAGTTTGACACTTCATCTTACCAACAAAGGGCGGAAGCCTTAGAAGGGTTGCTTGAATTTAGTGCAAGATTGCTCCAGCAAGCAAGGTATGATGAACTTGGAGTTTTGttgaaaccatttggtccggagaaggtttcgccaagagaaactgctatctggttgagcaAAAGCTTCAAGGAGAACACTAACAACCAGGAAGAATCTCCGTAA 1878 0.4036 MEQYEVLEQIGKGAFGSALLVRHKHEKKKYVLKKIRLARQTERSRRSAHQEMELISKLRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKAHGVLFSEEKLCKWLVQLLMALEYLHMNHILHRDVKCSNIFLTKGHDICLGDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCLYEMTAHKPAFKAFDIQALIIKISKSIVAPLPTKYSSSFRSLVKSMLRKNPELRPSASELLGHPHLQSYVLKIHLKLNSPRRNTLPAHWPESKYTKKTRFLVPEDDTVTICRDKRYSYSNDRTLNPCVSGADQDSVCSTLEIDCTPDHLNQRLAELCTGDSRDMKSVHKPVVSKTSSIAKTPKFTSSKVSATNRKSMEHSKNRKVVNQALPVSHSITKSAHTNRRASFPLPTRGGIQQPPFRQTVGLLSNVSSPDISVNSPRIDKIAEFPLASYEDSFFPINRTSTSAQGSLGFPSRDNYSSTVIDKCTIEVRDRASIKPSSTDDWQGIKRSMLKEIHKDKSGSSDQNATAGASSHTSSDLRRRQFDTSSYQQRAEALEGLLEFSARLLQQARYDELGVLLKPFGPEKVSPRETAIWLSKSFKENTNNQEESP 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00478 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Car04g00478 625 Gene3D Transferase(Phosphotransferase) domain 1 86 305 - -
Car04g00478 625 CDD STKc_Nek 3 258 - -
Car04g00478 625 SUPERFAMILY Protein kinase-like (PK-like) 1 293 IPR011009 -
Car04g00478 625 MobiDBLite consensus disorder prediction 530 560 - -
Car04g00478 625 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 610 - -
Car04g00478 625 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Car04g00478 625 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Car04g00478 625 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g00478 625 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g00478 625 MobiDBLite consensus disorder prediction 536 551 - -
Car04g00478 625 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g00478 625 PANTHER SERINE/THREONINE-KINASE NEK4 1 610 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00478 Car-Chr4 4894666 4901161 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00478 10 260 MAP Kinase Kinase Kinase AT1G53570 32.031 2.48e-37 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Car04g00478 Pkinase 5.8e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00478 K08857 - gmx:100804898 1058.9