Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00471 ATGGCAGGTAATTGTAGTTCGGAGGGATTAGGTGACGATTTCTTCGAGCAGATCTTAGCAGTACCTGAGAGCGGATATGGGAGGAATAACAAtaatagtagtaatagaggtatagtagtagATGATCATGTGTTACAATTGGGGTCCACAACAAATTTGAGAAGTGGAGGAATGCAATTACCATTGGGTTTGAATTTGGAGCAAAGTCATCATGGTTTTCTAAGGCACCAAGACACAACACGCTTTGTTGAAAACGTTGTTGATGTTGAGGGCAACATTACCAATAACAACAACCATCACCGACACCTCCGTCTCCATGACATCAATACCACTTCTAATTCCTCACCCTCTTCTACTCTACATCTGGATAGAGATTCGATGCATATGAGGGGTTTGTTTTCAACGTTTGGACAATTGCATACTCCTACTCATGCTCAACCTGTTCGCCCAATGCTCCCATCTCCACCACCTCAACCCCAACTCCACCTTCACCATCAACAACACCAACAGCAGTTTCAGAGCCAGGCACCAAATCCAACGTCTGTTGCTGCCATGCCACAACCACCAGGCATCCGCCCTCGAGTGCGAGCAAGAAGAGGGCAAGCCACAGACCCCCACAGCATCGCCGAGCGGTTACGTCGCGAAAGAATTGCTGAAAGAATGAAGGCATTGCAGGAATTAGTCCCCAGCATCAACAAGACGGACAAAGCAGCTATGCTTGATGAAATTGTTGATTATGTCAAGTTCCTAAGGCTTCAGGTTAAGGTCTTGAGCATGAGTAGACTTGGTGGAGCTGGTGCAGTTGCTCAACTTGTAGCTGATGTTCCTGTTTCTGCAGTAGAGGGGGAGGACGTAGAAGGTGGAGCCAACCAGCAAGCTTGGACCAAGTGGTCCAACGATGGCACTGAACAACAAGTTGCTAAACTAATGGAAGAAGATGTTGGTGCAGCTATGCAACTTCTTCAATCAAAGGCACTTTGTATCATGCCTATATCTCTAGCCTCAGCAATTTTTCGTATGCCtcaatcagattcatcaacaatcatcaagcctgaatcaaacaatcactcaTAG 1074 0.4339 MAGNCSSEGLGDDFFEQILAVPESGYGRNNNNSSNRGIVVDDHVLQLGSTTNLRSGGMQLPLGLNLEQSHHGFLRHQDTTRFVENVVDVEGNITNNNNHHRHLRLHDINTTSNSSPSSTLHLDRDSMHMRGLFSTFGQLHTPTHAQPVRPMLPSPPPQPQLHLHHQQHQQQFQSQAPNPTSVAAMPQPPGIRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSINKTDKAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPVSAVEGEDVEGGANQQAWTKWSNDGTEQQVAKLMEEDVGAAMQLLQSKALCIMPISLASAIFRMPQSDSSTIIKPESNNHS 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00471 357 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 199 260 IPR036638 GO:0046983
Car04g00471 357 MobiDBLite consensus disorder prediction 178 205 - -
Car04g00471 357 Pfam Helix-loop-helix DNA-binding domain 206 250 IPR011598 GO:0046983
Car04g00471 357 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 201 250 IPR011598 GO:0046983
Car04g00471 357 SMART finulus 207 256 IPR011598 GO:0046983
Car04g00471 357 Gene3D - 196 258 IPR036638 GO:0046983
Car04g00471 357 PANTHER DEHYDROGENASE, PUTATIVE, EXPRESSED-RELATED 8 344 - -
Car04g00471 357 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 8 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00471 Car-Chr4 4842939 4848274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00471 163 354 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 71.649 6.09e-80 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car04g00471 HLH 2.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00471 - - vun:114189791 411.379